YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11347658
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	38	0.94
Non-Cytoplasmic	39	43	0.71
Transmembrane Helix	44	58	0.73
Cytoplasmic	59	67	0.50
Transmembrane Helix	68	85	0.90
Non-Cytoplasmic	86	90	0.48
Transmembrane Helix	91	112	0.77
Cytoplasmic	113	115	0.61
Transmembrane Helix	116	134	0.82
Non-Cytoplasmic	135	148	0.64
Transmembrane Helix	149	169	0.91
Cytoplasmic	170	394	0.82
Transmembrane Helix	395	417	0.82
Non-Cytoplasmic	418	458	0.50
Transmembrane Helix	459	484	0.76
Cytoplasmic	485	489	0.73
Transmembrane Helix	490	509	0.89
Non-Cytoplasmic	510	518	0.62
Transmembrane Helix	519	538	0.92
Cytoplasmic	539	733	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSSLTHTL RRLWALDKFA YSLRVFIALA GALLLCWWQD RIELLIPLFL GIIASALAET  60
   61 DDNWLGRLQA LLVTLLCFSV AAFAVELLFP YPWLFVSGMA LSAFGMILLG ALGERYAAIA 120
  121 SATLILSIYT MIGVDQRGGE VADVWHEPLL LVAGAAWYGL LSVLWNALFS NQPVQQSLSR 180
  181 LYFELGEYLR IKSSLFEPLR QLDVEGQRLA LARQNGKVVV ALNQAKETIL NRLGHGRPGP 240
  241 KVSRYLKLYF IAQDVHERAS SSHYPYNRLA EAFFHSDVLF RCQRLLNQQG KACQALARAI 300
  301 RLRQPFDYAD RELALEDLQA SLEHLRQQSN PAWKGLLRSL GALAANLTTL DRKLAGASNP 360
  361 DAIADEQDSA LLDRSPRSLK DAFERLRQQL TPTSLLFRHG LRMALALTAG YGVLHWIHPT 420
  421 QGYWILLTTV FVCQPNYGAT RLRLVQRILG TVVGLVGGWA LIDLFPSPLV QSLFAVAAGV 480
  481 AFFATRSSRY TLATAAITLL VLFCFNQVGD GYGLILPRLF DTLLGSLIAG LAVFLVLPDW 540
  541 QGRRLNRMLA NTLACNSRYL RQIMQQYATG KRDDLDYRTA RRNAHNADAA LSTTLSNMLL 600
  601 EPGHFRKDAE IGFRFLVLSH TLLSYLSGLG AHRESLPEDA SDGLLERAAE RLSASLEEIA 660
  661 ASLEQKRPVA IYSEEEEALA KELEQMPEDM DDSHRLVQTQ LAHICRQLAP LRTLAAHLLK 720
  721 KELAGAQPLP GQP