YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85093967
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.67
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.67
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	68	0.98
Transmembrane Helix	69	91	0.93
Cytoplasmic	92	99	0.83
Transmembrane Helix	100	122	0.90
Non-Cytoplasmic	123	137	0.92
Transmembrane Helix	138	160	0.92
Cytoplasmic	161	296	0.99
Transmembrane Helix	297	321	0.82
Non-Cytoplasmic	322	337	0.84
Transmembrane Helix	338	360	0.86
Cytoplasmic	361	377	0.82
Transmembrane Helix	378	397	0.84
Non-Cytoplasmic	398	410	0.79
Transmembrane Helix	411	428	0.95
Cytoplasmic	429	468	0.93
Transmembrane Helix	469	489	0.90
Non-Cytoplasmic	490	502	0.85
Transmembrane Helix	503	522	0.90
Cytoplasmic	523	537	0.86
Transmembrane Helix	538	556	0.94
Non-Cytoplasmic	557	572	0.76
Transmembrane Helix	573	596	0.88
Cytoplasmic	597	607	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVTTRPLL AALTGAAVFG LLVPTVLAHG GDEGGHSGHG GMEMTDADKP RPEEEYPLTY  60
   61 FAHPDHKTAI YAHIALMVLA WVFMLPVGVM LSIARSRYRL LAQFAFLVTN AGGMLIGIVY 120
  121 NASTPDLYPN NAHHKLGWVV TWLVGAQFAI GLLASVAGVF KKQQSDGNSR ERQGFMPVST 180
  181 QAMEEHNSHI KPAHNDAYRF SNDSGQGTEL SSDAPRSPSL SSSSGAVSRQ PLALQDVNLH 240
  241 TKEYDDGEDS YDVNSHSGSE PLGPILPASG KAVSIINKIA DKISGKFWKV LILAYNVVDR 300
  301 AILPLGFVAL CTGIVTYGRF FEGSGIFSGL AHWIKGGIFF WLGIFTLGRW AGCFGEVGWA 360
  361 WNVRPKQAGQ KWRPSAEFVE SALIFTYGAT NVFLEHLGNW GGAWSAQDLE HFSITILFIG 420
  421 GGLCGMLIES VRIRDLLNTT VTEESRQQHH FHDAEVEDSE RREPETYSFS MNPIPALVIL 480
  481 LLGIMMSSHT QDSMISSMVH KQWGNLLTGA SFARGFTYVI TYLKPPRSVY PSRPPTELLT 540
  541 AFGLISGGII FMASAGDTVS GMIHYQLDAM FTYTVTMGLV GLLMAWVILC IALKGWAVRK 600
  601 EAGRYRN