YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14024237, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.89
Transmembrane Helix	18	37	0.93
Non-Cytoplasmic	38	52	0.85
Transmembrane Helix	53	76	0.89
Cytoplasmic	77	85	0.88
Transmembrane Helix	86	105	0.95
Non-Cytoplasmic	106	110	0.84
Transmembrane Helix	111	131	0.94
Cytoplasmic	132	150	0.91
Transmembrane Helix	151	172	0.93
Non-Cytoplasmic	173	203	0.90
Transmembrane Helix	204	223	0.84
Cytoplasmic	224	259	0.87
Transmembrane Helix	260	280	0.87
Non-Cytoplasmic	281	287	0.66
Transmembrane Helix	288	307	0.94
Cytoplasmic	308	317	0.81
Transmembrane Helix	318	340	0.89
Non-Cytoplasmic	341	363	0.84
Transmembrane Helix	364	383	0.91
Cytoplasmic	384	398	0.90
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	429	0.71
Transmembrane Helix	430	449	0.94
Cytoplasmic	450	458	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVAVQRAS GRGIWGWMFF DWAAQPFFTV VTTFIFGPYF VSRMAGDPNT GQAVWGYGIA  60
   61 AAGLVIAVLS PILGSIADQT GPRKPWIAFF AAIKITSLAL LWFAAPGSNL FLVVALFSLA 120
  121 SVAAEFSTVF NDSMMPRLVP KSEIGRISNT AWGLGYLGGM IALIFVVTCL AGSPETGKTI 180
  181 IGIDPLFGLD PKLGEDARAT GPLSAGWYFL FILPMFFFTP DAIKGIPIGP AVREGLLELK 240
  241 STLAEVRRRG GIFRFLVARM IYQDGVNALL ALGGTFAAGM FHWSITEIGM FGIILNVVAI 300
  301 FGCWIAARLD TALGSKAVVM IALVMLSIAT IGIISTGPGF TLLGLIQLPT TDSGGLFGTA 360
  361 AEKAYILYGL LIGLAFGPVQ ASSRSYMARS VTAAESGRYF GIYALAGRAT SFLAPFLVAT 420
  421 ITALSDSARL GMAVIILFLG IGMAILVRTP YPADRPAE