YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85111345
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFIVFDFD GTVTQQDTIN VLAQFAISSR GCAYSQQSAS ENWKRIVDLY LADYAKHKEL  60
   61 YVPKAEYRKL LAQELAYLES LQTVELSSAE RVVNTGFFAR LTSEQWEEFG RQARRIGEEW 120
  121 NPDWDGDEGK AVRVRKGFSE FVQQAKARGD KLGLVSVNWS RSFVEGVIEP EDPDRSEFVK 180
  181 RVNEIKWPGG QLEGPEEMGG KVMMTAKDKL EGFETMLLEE AAGESKKRKS VYFGDSVTDL 240
  241 ECLLRADTGI VVVNEGEEEQ STLLGTLKRL GFEVPHVSEG REGIKLAWAR DFKEVLGNNM 300
  301 CIHHRLIYRK CGHFTWLGIT KKCQSERNFD QGKIDEGCNV MWTHPLSTYR VDRCCESCAL 360
  361 ERATTDRAID EIRGRIQLTR ELLAKIQDLR EASSGVQERG WSDGGVESAA SMNRGSIVKV 420
  421 GVVDDCGGDG DVEEAETMDL IDPNEVIKFV GGISIGLQPL KSPNPPKKRL ERKLKAKIPI 480
  481 RSSSLQIQHV IVKDHGPLRA RANPRQAIWG SGNEDRALSP LNPACPNRNH GIHNMPSNFL 540
  541 SNSPRPTERA PPPAADMADI PPIPPQLKKR AISWNDSLWT LIDWQHYQEP RSIVLYTLPT 600
  601 IGAFALFGIW RSFLRRFRGT AYISPGFFRR RTLLGKVTSV GDGDNFHFFH TPGGRLAGWG 660
  661 WLRRVPMVRK ELKDRTIPIR IAGIDAPEGA HFGRPAQPYS SEALQWLRNY ILGKRVRARI 720
  721 YRKDQYDRVV ATVFVRKPPF FLRKDVGLEM LKLGLATTYE AKTGAEFGGP KMEQVYKNAE 780
  781 AAARRKGKGM WANTLTGFFG LGRRREIESP RQYKDRMRAA GNTILGKKTA APKATTATKK 840
  841 APAVKRETAA AAKKEKTKAT AADSTVAKMP 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle