YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28924953, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	420	0.98
Transmembrane Helix	421	443	0.77
Cytoplasmic	444	449	0.89
Transmembrane Helix	450	470	0.92
Non-Cytoplasmic	471	476	0.71
Transmembrane Helix	477	498	0.91
Cytoplasmic	499	509	0.87
Transmembrane Helix	510	532	0.94
Non-Cytoplasmic	533	544	0.88
Transmembrane Helix	545	565	0.94
Cytoplasmic	566	612	0.98
Transmembrane Helix	613	638	0.78
Non-Cytoplasmic	639	649	0.77
Transmembrane Helix	650	669	0.94
Cytoplasmic	670	676	0.80
Transmembrane Helix	677	696	0.92
Non-Cytoplasmic	697	703	0.75
Transmembrane Helix	704	725	0.90
Cytoplasmic	726	736	0.78
Transmembrane Helix	737	757	0.86
Non-Cytoplasmic	758	766	0.76
Transmembrane Helix	767	787	0.96
Cytoplasmic	788	821	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFPTTAQSS TCSLLMLLQL HAAAAALSIP SPSPLSSLAT DTGIPSQNLL TYLSTTHDTS  60
   61 PPNSFALCTT ILSRDKAALL LPNARIPLSS AGFIDCFLEK PQGPQAEEDN QHQQLVFTGI 120
  121 PAGWQFSITD ITVVATSTEK IAGVGGDSSS SMGHDMHNSQ EEEVQRDKGW KWKWDLIKRR 180
  181 ERRKPSKAMP GTKGGSQALV DTATAIAPYG RFGTGYRGGF NLSIPVKPSS GASKNGKREQ 240
  241 RLAVSSCSTG TEMEVRLGAE LWISLSSEQI EFDDTVVHRG RLGGELEEDP GEGDGRHQGW 300
  301 EACEKTLRVD SNLYHTMASS SPLPPPAPPR SPSPSGEKKS DPERQDELYT KPDVEDGQNP 360
  361 ASSTLEILDP KAETALLHKL DSVFVPIIML VYLSCFLDRS NIGNVKVAGM PEDIHATPAQ 420
  421 FSTAVSIFYA TYVAFEAPWA ILLKRLTPRV TLTTLCVVWS LTTIFSGFIT NIGGLYAARL 480
  481 VLGACEGGLF PGLNLYLTMV YKREEQARRV SYLFVCTAIA GAFGGLLAYL ILKMDGVGGQ 540
  541 AGWRWVYIIE GIFSVLIGAL VWFALPNDPT EAYFLNEEEK RMMRVRARQR AQYMGSEDFS 600
  601 WEEIRIALKD TKLWLSGAIQ FCQDILLFGF STFLPSIIQS MGHTSIEAQY LTIPVYITGG 660
  661 LFFMGLAFLS DKIAVRGPLV AFANIFGILG YILIICPTSN GVKFFGTFLC AAAVYSGPGL 720
  721 NLTWLNVNVA PHYRRAAAIG FQQTMANTAG IVAGQIYREK PYLLGNAFSL AALVVSEFLI 780
  781 AGLWLYIRSC NRKKERISKG EIEDTRKVRT GDGALDFKYH L