YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49244828, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIDKQFWKT IYYWIRYLNF DIVSREKDDQ EIWLAHKRKK QVVIFKQHIK STQEIRFDKA  60
   61 KVLEHKDEIA NFISFEPQSF EFYYFTESEF SEEQLNEVSP IRIKFNVIRH TKDLIKHMPN 120
  121 IFLARLISED NDKKTYMFYK RKVLTDNFLD KYMQKFSPAT YTIIFVNVLI WLCMILYLNN 180
  181 FSDVKLLDVG GLVHFNVVHG EWYRIVTSMF LHFSFEHILM NMLSLFIFGK IVEAIIGSWR 240
  241 MLTVYFIAGL FGNFVSLSFN TTTISVGASG AIFGLIGSIF AMMYVSKTFN KKMLGQLLIA 300
  301 LVILVGVSLF MSNINIVAHI GGFIGGLLIT LIGYYYKVNR NIFWILLIGM LVIFIALQIR 360
  361 IFTIKEDNIY NKLIKDDMTS GNYDNAQNIV KQTINKNYAD DQTYYLSGMI MATINSKSEG 420
  421 MTEWERGLRM FPKSGLLNFE LAIANRSLND DEKALKYVRK ALNADPKNAD YINLEKELTK 480
  481 SNESKNK

Type	Start	End	Confidence
Cytoplasmic	1	158	0.98
Transmembrane Helix	159	178	0.94
Non-Cytoplasmic	179	208	0.83
Transmembrane Helix	209	229	0.84
Cytoplasmic	230	235	0.79
Transmembrane Helix	236	257	0.84
Non-Cytoplasmic	258	263	0.71
Transmembrane Helix	264	285	0.91
Cytoplasmic	286	292	0.88
Transmembrane Helix	293	311	0.89
Non-Cytoplasmic	312	315	0.61
Transmembrane Helix	316	336	0.77
Cytoplasmic	337	341	0.65
Transmembrane Helix	342	362	0.93
Non-Cytoplasmic	363	487	0.71