YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28919722, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	189	0.99
Transmembrane Helix	190	210	0.93
Non-Cytoplasmic	211	221	0.75
Transmembrane Helix	222	242	0.91
Cytoplasmic	243	260	0.86
Transmembrane Helix	261	279	0.94
Non-Cytoplasmic	280	297	0.85
Transmembrane Helix	298	319	0.92
Cytoplasmic	320	331	0.85
Transmembrane Helix	332	353	0.91
Non-Cytoplasmic	354	360	0.83
Transmembrane Helix	361	383	0.95
Cytoplasmic	384	402	0.91
Transmembrane Helix	403	425	0.91
Non-Cytoplasmic	426	444	0.89
Transmembrane Helix	445	468	0.87
Cytoplasmic	469	476	0.85
Transmembrane Helix	477	498	0.92
Non-Cytoplasmic	499	504	0.86
Transmembrane Helix	505	525	0.94
Cytoplasmic	526	549	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGQSTNMGS QPPMPPPVQT GTHVIIHDTT YNQNQQSPTQ HQQQNRLNPV DTSFLGSHSR  60
   61 QSSSATVTGD DSDPSRAFGT YAGTPKGEYE KKGRSTDYLS GPTGDNSLNT SAASSRLALN 120
  121 SNNEKSNHDG HMSGGAGHHH RRSASPSSSS SDSDSDLEGA GGHMQKGHHN IDPYDPSRPK 180
  181 LPLKARLKHF TWAWYTLCMS TGGLSLLIAA QPHTFPGLRQ IGMTVYIINI IIFVLLTSLQ 240
  241 ITRFMLHAGS FKASLTHPRE GFFFPTFFLS IATLITSTQK YGTPPDSEPS QDLVWVLHIA 300
  301 FWIYLILATA VAIGQYSFLF SQKRSFSLAT MMPTWILPIF PIMLSGTIAA VISPFQPPHR 360
  361 AIVVICAGLT CQGLGAAVAF MMYAHMVGRL MSVGLPDREH RPGLFMCVGP PSFTALAFIG 420
  421 MAQGLPRDFD HDMDGFIDAG MIRTMAVIGA VFLWALAFWW FFIGVLAVLA SRPKYFHLGW 480
  481 WASVFPNTGF TLATISIGNA FQSDAVLWVG TGMSLCLLGT YLFVLGNHVR AVVVQDICYP 540
  541 GRDEDVEDH