YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256553, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLIGVFGL VLILGIAWLA SNDRKKVKYR PIITMVILQF ILGFLLLNTS VGNILISGIA  60
   61 DGFGELLKYA ADGVNFVFGG LVNQKEFSFF LGVLMPIVFI SALIGILQHI KVLPIIVKSI 120
  121 GLALSKVNGM GKLESYNAVA SAILGQSEVF ISVKKQLGLL PEKRMYTLCA SAMSTVSMSI 180
  181 VGSYMVLLKP QYVVTALVLN LFGGFIIASI INPYEVTEEE DMLEVQEEEK KTFFEVLGEY 240
  241 IIDGFKVAIT VAAMLIGFVA LIAFINAVFK GVIGISFQEI LGYAFAPFAF IMGVPWHEAV 300
  301 NAGNIMATKL VSNEFVAMTD LAQGNFNFSD RTTAIISVFL VSFANFSSIG IIAGAVKSLN 360
  361 EKQGNVVARF GLKLLFGATL VSFLSATIVG LLF

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.93
Transmembrane Helix	4	22	0.88
Cytoplasmic	23	31	0.91
Transmembrane Helix	32	56	0.84
Non-Cytoplasmic	57	86	0.91
Transmembrane Helix	87	110	0.88
Cytoplasmic	111	165	0.81
Transmembrane Helix	166	188	0.62
Non-Cytoplasmic	189	246	0.62
Transmembrane Helix	247	269	0.90
Cytoplasmic	270	279	0.62
Transmembrane Helix	280	297	0.89
Non-Cytoplasmic	298	333	0.86
Transmembrane Helix	334	356	0.92
Cytoplasmic	357	369	0.86
Transmembrane Helix	370	392	0.90
Non-Cytoplasmic	393	393	0.95