YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265050, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.13
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREAVIVAGA RTPIGKAKRG SLKTVRPDDL GALVVKETLK RANYEGPIDD LIFGCAMPEA  60
   61 EQGLNMARNI GGLAGLSYDV PAITINRYCS SGLQSIAYGA ERIMLGHSEA VLSGGAESMS 120
  121 LVPMMGHVVR PNSRLVEAAP EYYMGMGHTA EQVAVKYGIS REEQDAFAVR SHQRAAKALA 180
  181 AGNFADETVS VDVTLRTVGA NNKLQEETIT FAQDEGVRAE TTLDILGKLR PAFNVRGSVT 240
  241 AGNSSQMSDG AASVLLMDRE KAVSDGMKPL AKFRSFAVAG VPPEVMGIGP IAAIPKALKL 300
  301 AGLELSDIGL FELNEAFASQ SIQVIRELGL DEEKVNVNGG AIALGHPLGC TGAKLTLSLI 360
  361 HEMKRRNEQF GIVTMCIGGG MGAAGVFELL

Type	Start	End	Confidence
Non-Cytoplasmic	1	369	0.51
Transmembrane Helix	370	389	0.70
Cytoplasmic	390	390	0.13