YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260839, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	57	0.86
Non-Cytoplasmic	58	64	0.65
Transmembrane Helix	65	84	0.92
Cytoplasmic	85	92	0.84
Transmembrane Helix	93	111	0.93
Non-Cytoplasmic	112	116	0.77
Transmembrane Helix	117	135	0.92
Cytoplasmic	136	153	0.86
Transmembrane Helix	154	175	0.92
Non-Cytoplasmic	176	193	0.87
Transmembrane Helix	194	214	0.92
Cytoplasmic	215	250	0.95
Transmembrane Helix	251	268	0.95
Non-Cytoplasmic	269	297	0.88
Transmembrane Helix	298	319	0.89
Cytoplasmic	320	332	0.86
Transmembrane Helix	333	352	0.94
Non-Cytoplasmic	353	369	0.84
Transmembrane Helix	370	392	0.82
Cytoplasmic	393	402	0.64
Transmembrane Helix	403	423	0.89
Non-Cytoplasmic	424	430	0.77
Transmembrane Helix	431	452	0.92
Cytoplasmic	453	461	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAIQLEKE QQRKKKHPPG LYLLFFTEMW ERFSYYGLRG LLTLYLTTAL VSGGLGFSPA  60
   61 WALSIYGFYT GACYFTPMIG GYLTDRFLGR RKAITIGGIT MAIGNLTLFA MQNQVGLYLG 120
  121 LALIIIGNGF FKPNISTLVG ELYEENDPKR DSAFTIFYMG INVGSFLAPL VCGFLSENLF 180
  181 KTTVDGVVHY GFRYGFLAAS IGMIIGQILF TTLSNRFLGD IGKKPTRDLQ TTDGQPSVGD 240
  241 TPLTKKEKQR TAVIVILTCF VVFFWAGFEQ AGSSLTLYTN KFVDRSVFGW EVPTSWFQSV 300
  301 NPLFIILLAP VISALWAKLA TRKRGDLKIP TKMGLGMILL GIGYIILVIA TLKTGSDEHN 360
  361 ITEKANLLFI VFTYLFHTLG ELFLSPVGLS MVSALAPVKL ASLLMGVWLA SSGIANILGG 420
  421 QLASFTTSLG YAEVFTVIGA VAIVLGCVLL LISKKLVKWM D