YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262947, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFILNMLGI FVVILIVYLC SPNKKHIKWR PIVILIILEL FITWFMLGTK LGSIIINKIA  60
   61 SFFSWLLACA NEGIRFAFPS AMENQTIDFF FSALLPIIFV ITFFDILSYF GILTWIIDKV 120
  121 GAVISKISRL PKLESFFSIQ MMFLGNTEAL AVVRDQLSVL KENRLLTFGI MSMSSVSGSI 180
  181 LGAYLSMVPA TYIFSAIPLN CINALILANV LNPVEVSKEE DVVYTPSKHE KKDFFSTISN 240
  241 SMLVGMNMVI VILAMVIGYV ALTACLNGIL GFFVTGLTIQ KIFSIIFSPF AFLLGLSGSD 300
  301 AMYVAELMGI KITTNEFVAM MDLKSNLKSL QPHTVAVATT FLASFANFST VGMIYGTYNS 360
  361 LFGGEKSSVI GKNVWKLLVS GMAVSLLSAM LVGLFVW

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.79
Transmembrane Helix	4	22	0.87
Cytoplasmic	23	31	0.66
Transmembrane Helix	32	56	0.79
Non-Cytoplasmic	57	88	0.44
Transmembrane Helix	89	117	0.77
Cytoplasmic	118	164	0.58
Transmembrane Helix	165	187	0.85
Non-Cytoplasmic	188	247	0.68
Transmembrane Helix	248	274	0.82
Cytoplasmic	275	281	0.55
Transmembrane Helix	282	304	0.80
Non-Cytoplasmic	305	334	0.77
Transmembrane Helix	335	358	0.85
Cytoplasmic	359	373	0.74
Transmembrane Helix	374	396	0.91
Non-Cytoplasmic	397	397	0.84