YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260445, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.87
Transmembrane Helix	18	39	0.86
Non-Cytoplasmic	40	54	0.83
Transmembrane Helix	55	76	0.88
Cytoplasmic	77	80	0.74
Transmembrane Helix	81	101	0.85
Non-Cytoplasmic	102	107	0.65
Transmembrane Helix	108	127	0.93
Cytoplasmic	128	138	0.88
Transmembrane Helix	139	161	0.88
Non-Cytoplasmic	162	174	0.82
Transmembrane Helix	175	195	0.89
Cytoplasmic	196	200	0.86
Transmembrane Helix	201	219	0.94
Non-Cytoplasmic	220	245	0.80
Transmembrane Helix	246	273	0.75
Cytoplasmic	274	290	0.82
Transmembrane Helix	291	313	0.84
Non-Cytoplasmic	314	320	0.74
Transmembrane Helix	321	343	0.79
Cytoplasmic	344	348	0.51
Transmembrane Helix	349	371	0.84
Non-Cytoplasmic	372	384	0.63
Transmembrane Helix	385	411	0.81
Cytoplasmic	412	420	0.64
Transmembrane Helix	421	439	0.93
Non-Cytoplasmic	440	441	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRYFQFDEL GTNYKTEFIA GLTTFLSMAY VLFVNPATLS LGNVKGLPAG TGMDPGAVFV  60
   61 ATALAAAIGS LIMGIFAKYP IALAPGMGIN AFFAYTAVLT MGIPWQTAIA GTLMSGIIFI 120
  121 ILTASGIREK IINAIPSELK FAVAAGIGLF IAFLGFQNAG IIVKNDAVLV GLGDLTKGTT 180
  181 LLAIFGVVTT IIFMIKKVNG AVFYGMILTA ILGVATGLID TPKAVVGAIP SLEPTFGAAL 240
  241 THFGDIFTVQ MGIVIITFFF IDFFDTAGTL VAVANQAGLM KNNKLPRAGK ALFADAIATV 300
  301 IGAILGTSTT TSYIESSAGV AAGGRSGFTA VVTAGFFLLA LFFSPLLSVV TPAVTAPALI 360
  361 IVGILMVSSL GEIDWKKFEI AVPAFFTIIS MPLTYSIATG IAIGFIFYPI TMVVSGRRKE 420
  421 IHPIMYVMGV LFVLYFIYVR K