YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85082668
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPRVLAAN VVRAVPRVMT ASATASLWRL SAQAGRARLS LTRAPRHCLR VASYSSSAGG  60
   61 AASSPPPPST LSSSRPATIE VNGKTYTTDE WYNVPQTVLA LTGRKLHLQK DHPVAITRQI 120
  121 IESKFSTATY KRYNEFDPVV STIENFDSLG FPPDHVGRAR SDTYYINETT LLRTHTSAHE 180
  181 AELFRASASD GYLISADVYR RDEVDRSHYP VFHQMEGARV WDRTKVPNGD VVAAIYADLA 240
  241 KLPTHDVKVE DPNPPHHPER NPLQSKHHSP EEAEAIAAHL KRSLELMVVE IFTRAKQAAA 300
  301 RQDPNYVDEP LRVRWVEAYF PFTSPSWELE VYYQGDWLEV LGCGVSKQEL FINADQPQQL 360
  361 GWAFGIGLER IAMLLFQIPD IRLFWSKDER FLSQFTGVQD NLDKLKRFVP FSKYPACWKD 420
  421 VSFWLRSTSA AGGNTAVANV HDFHENDLME VVREVAGDVV EDVQLKDQFT HPKTGRKSMC 480
  481 YRINYRSLEK TLTNEEANDF HERVRQGLVE KLGVELR

Type	Start	End	Confidence
Signal Peptide	1	34	0.87
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	517	0.98