YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260106, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	31	0.93
Non-Cytoplasmic	32	51	0.77
Transmembrane Helix	52	74	0.87
Cytoplasmic	75	100	0.92
Transmembrane Helix	101	125	0.83
Non-Cytoplasmic	126	145	0.80
Transmembrane Helix	146	167	0.88
Cytoplasmic	168	185	0.89
Transmembrane Helix	186	204	0.95
Non-Cytoplasmic	205	225	0.88
Transmembrane Helix	226	246	0.93
Cytoplasmic	247	261	0.90
Transmembrane Helix	262	284	0.90
Non-Cytoplasmic	285	298	0.90
Transmembrane Helix	299	320	0.88
Cytoplasmic	321	328	0.65
Transmembrane Helix	329	362	0.71
Non-Cytoplasmic	363	370	0.49
Transmembrane Helix	371	395	0.82
Cytoplasmic	396	410	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTKDMHYM LVLYGILLGS IVGATVWLFL VTINIGIHFI WEYLPTIFAS PPYYTICVTT  60
   61 IGGILVGLTQ KYFGTYPRLM PEVMGEYKKT GRIEYRFVHK ATLTAIIVLI FGASLGPEAA 120
  121 LVGIIGGLCT WVGDRFTFAL KGMNGLTEVG IGATLSVIFN APLFGYLAPN ENEGEQINEF 180
  181 SKGKKAIVYL ATTFAGFSVY LLLSKFDNRG SFIVDFGKGS LSLNEWIAFL PLASIGAIVG 240
  241 FFYFKLEFTL EKLIHPLKEY KLALGIIGGI LLGITGTFLP YTLFSGEHQL KDLVVEWSHL 300
  301 SFWVLLLSGI LKLCITAVCL NTGWRGGHIF PIIFAGSSIG YAIASIIPID PIASVAVVTT 360
  361 AISSYALRKP IAITLLLLMF FPLNLLLPML GAAAIGNAFP LPKNNEATNE