YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260094, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.77
Transmembrane Helix	13	36	0.86
Non-Cytoplasmic	37	43	0.72
Transmembrane Helix	44	64	0.92
Cytoplasmic	65	73	0.74
Transmembrane Helix	74	94	0.94
Non-Cytoplasmic	95	100	0.74
Transmembrane Helix	101	122	0.92
Cytoplasmic	123	132	0.60
Transmembrane Helix	133	154	0.86
Non-Cytoplasmic	155	162	0.74
Transmembrane Helix	163	182	0.89
Cytoplasmic	183	191	0.56
Transmembrane Helix	192	213	0.89
Non-Cytoplasmic	214	233	0.72
Transmembrane Helix	234	255	0.88
Cytoplasmic	256	285	0.68
Transmembrane Helix	286	308	0.73
Non-Cytoplasmic	309	332	0.56
Transmembrane Helix	333	361	0.77
Cytoplasmic	362	372	0.92
Transmembrane Helix	373	395	0.91
Non-Cytoplasmic	396	401	0.80
Transmembrane Helix	402	424	0.91
Cytoplasmic	425	433	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEVDIMKTF LSALQWALFI LAGSLIVPIS VATSYGLDGA EAIAFVQRTL FVLGFAGLLQ  60
   61 AIFGHKLPIQ EGPAGLWWGI FSLYASLGVV LFGSSNETLK VLQYAFLLSG IICIILSVFG 120
  121 LIDKLVRYFT PTVIGTYLFL LVAQLSGAFL KGMFGLDGQH TEVQADVFIL SLIVILLSFF 180
  181 IMKLPIIGQY SVLFSIVCGW ILFACFGLSN PITPVTDIIR LPSLFVFGMP RIEWNMAITV 240
  241 VFVTLLLLTN MLASIRVVQK VVSKYEENAT PDRFKQAGII TGINQLLGGL FSAIGPVAIS 300
  301 GSAGFIATTN IYKRLPFMLG SSFIIVVSIF PKITSFFAAI PVAVGYAAIY PVFASMIGLA 360
  361 FREYDTVQNK ERLFKVAGLS IFTGVGVMFV PAGAFSTLPP FLASFLSNGL VLGSVMAILL 420
  421 EILFSRSTEK QLS