YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265176, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLIPTVIEQ TNRGERAYDI YSRLLKDRII MLGSAIDDNV ANSIVSQLLF LESQDPEKDI  60
   61 HIYINSPGGS ITAGMAIYDT MQFIKPQVST ICIGMAASMG AFLLAAGEKG KRYALPNSEA 120
  121 MIHQPLGGAQ GQATEIEIAA KRILFLREKL NQILADRTGQ PLEVLQRDTD RDNFMTAEKA 180
  181 LEYGLIDKIF TNR

Type	Start	End	Confidence
Cytoplasmic	1	59	0.53
Transmembrane Helix	60	78	0.37
Non-Cytoplasmic	79	86	0.69
Transmembrane Helix	87	106	0.67
Cytoplasmic	107	193	0.55