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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30264801, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWNWLRKKK KLNTTEKNET DNSEQKPNNQ EDDNKEQTRS TKHNKSNNSE QKKEEHKESS  60
   61 QDKQQNQSNQ NQQQSAKQDE SSQGQQNHSK QDDSDQGQQQ HSKQGNSDQG QQQHSKQGDS 120
  121 NQGQQNHSKQ NDSDQGQQQH SKQDESSQEQ QNHSKQDDSD QGQQQHSKQD ESSQEQQNHS 180
  181 KQDDSDQGQQ QHSKQDESSQ EQQNHSKQDD SDQDDSFQDT QQSSKQDDLA QDKQQHSKQD 240
  241 NSDQDKQQNS KGNSIYDFSK PEKDRIHSLQ DLIEKLKKSS DFVNYHTSDD ETMPYWISYY 300
  301 RPSLDGEKLQ KYLMPTLLER PNASLEELKE HIPMSGITIT NDLQKIEDMV LKGHAIVQVN 360
  361 QQDQKCMLAN IAIDNYRAPT PPLNESTVIG PQEGFVEDID TNINLVRKRL PVLDLQTKEM 420
  421 IVGEFSKTKV VMMYLDNLAE KDNVDFLEES LRALEYDQIN DSAYIQELMG EKSIFPLYIN 480
  481 TERTDRVTKA LIDGKIAIFV DGSPSVLLTP VSYFDFFISP EDYNVSWLYA TFSRILRLIA 540
  541 VLFSICATPL YVAVLNYHYE LIPSDLLETL ILSRAQVPFP PLIEALFLEL AIDLLREAGA 600
  601 RLPMKVGQTL GIVGGIVIGQ ASVQAGLTSN ILLIIVALSA LASFITPIYK MGNAVRLLRF 660
  661 PFLIFAEIGG LFGISLGFIF LFTHLFRLTS LRKPYALFYP TRQQSVKDSW IRFPLTMIDT 720
  721 RDVQARPQHV KKSAKGISTK HRSDFDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle