YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259276, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	33	0.89
Non-Cytoplasmic	34	41	0.88
Transmembrane Helix	42	65	0.93
Cytoplasmic	66	75	0.92
Transmembrane Helix	76	98	0.90
Non-Cytoplasmic	99	118	0.92
Transmembrane Helix	119	141	0.91
Cytoplasmic	142	152	0.83
Transmembrane Helix	153	172	0.95
Non-Cytoplasmic	173	191	0.91
Transmembrane Helix	192	215	0.86
Cytoplasmic	216	228	0.91
Transmembrane Helix	229	251	0.91
Non-Cytoplasmic	252	281	0.84
Transmembrane Helix	282	304	0.91
Cytoplasmic	305	313	0.83
Transmembrane Helix	314	335	0.88
Non-Cytoplasmic	336	340	0.76
Transmembrane Helix	341	362	0.92
Cytoplasmic	363	369	0.80
Transmembrane Helix	370	390	0.91
Non-Cytoplasmic	391	407	0.89
Transmembrane Helix	408	429	0.92
Cytoplasmic	430	441	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSLKFSEM FAISLMLFAL FFGAGNMIFP PALGQGAGTD VWIALFGFIV TGVGLPLLGV  60
   61 IVIALKGDIN ELAGRVHPIF ALVFITAIYL CLGVFVSVPR TGTVAYEMSV APFLPSEIAG 120
  121 QSYSLVIFTF IFFAVTFYLA LNPSKLVGRI GKVLTPILLA VIAIIVGKAL ITPIGEFGAP 180
  181 TEAYSAPLFK GFIDGYLTLD GLAALVFGNV VIHALKEKGI TNKNSIAKVT IFAGFIAALG 240
  241 LLLVYLALAY LGASSVSLGM GANGGIILTN VVNHLFGSYG TLLLGIAITA ACLTTSVGIV 300
  301 AACGDYFSSL LPKLSYQKVV FIFCVLAFMV ANLGLTQLNA LALPILIAIY PIGIVLIVLS 360
  361 LVENYVRLPL AMYVGGIVGA FAISFFDGLH NANLQIAALA PILDKIPLYS VGIGWLVPGI 420
  421 IGIGFGYIVS KFQKQEVAVE K