YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	30	0.94
Non-Cytoplasmic	31	64	0.92
Transmembrane Helix	65	85	0.93
Cytoplasmic	86	94	0.85
Transmembrane Helix	95	113	0.95
Non-Cytoplasmic	114	120	0.73
Transmembrane Helix	121	140	0.93
Cytoplasmic	141	149	0.85
Transmembrane Helix	150	172	0.91
Non-Cytoplasmic	173	193	0.86
Transmembrane Helix	194	213	0.85
Cytoplasmic	214	237	0.61
Transmembrane Helix	238	252	0.88
Non-Cytoplasmic	253	253	0.09
Transmembrane Helix	254	268	0.66
Cytoplasmic	269	276	0.33
Transmembrane Helix	277	299	0.81
Non-Cytoplasmic	300	305	0.44
Transmembrane Helix	306	328	0.81
Cytoplasmic	329	356	0.56
Transmembrane Helix	357	381	0.85
Non-Cytoplasmic	382	407	0.54
Transmembrane Helix	408	429	0.92
Cytoplasmic	430	436	0.49
Transmembrane Helix	437	456	0.93
Non-Cytoplasmic	457	461	0.47
Transmembrane Helix	462	484	0.91
Cytoplasmic	485	490	0.51
Transmembrane Helix	491	513	0.90
Non-Cytoplasmic	514	516	0.47
Transmembrane Helix	517	535	0.48
Cytoplasmic	536	540	0.66
Transmembrane Helix	541	560	0.90
Non-Cytoplasmic	561	582	0.82
Transmembrane Helix	583	608	0.88
Cytoplasmic	609	623	0.73
Transmembrane Helix	624	643	0.93
Non-Cytoplasmic	644	651	0.69
Transmembrane Helix	652	669	0.95
Cytoplasmic	670	678	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLQHTLRA SLVFGGGGAL LLLLFFIHIG QGQANISYSM IIDALISPNQ SLEHQTLIML  60
   61 RLPRAVIAIL AGGALAASGV ILQTLTKNPL AESSTMGIHS GAYFFLVAAT IFLPKGLQIN 120
  121 SLLFTFIGGA ITALFVYRIS GEKKGTPLRM ALAGMVVTLM LSAFTGTMQL FYENETAGLF 180
  181 LWGAGSLIQN NWDGVQFSFP FIIISFLVLL GISRKLNILL LGDDVAVSLG EKTAVTRLIA 240
  241 FIAAIFLTAV IVTVVGPIGF VGLVAPHLMR LIGYRQHFTL LLSSFLWGAV LLLGADVAGR 300
  301 LIDPTGAELP VGAVTAMIGS PWLIYLVYRM MKSKQYMNDN GANTAGASSR YYSYKKVIII 360
  361 SITLCIVTIA LGVTIGSNAY IESITNVISG QLTQFDKNMM MNLRLPRMLV AAIAGACLAI 420
  421 SGLVFQGILR NPLADPSIIG ISSGAGVGAL TIMYVFPTLP GFFLPIGAFI GGLLAVGIVL 480
  481 FFSWKSGFSP TALALIGIGI SALGSAIIQI FIVKANLNVA AALTWLSGST YARGWNHLEN 540
  541 IILYPSLILV LIIFFLIKQL DVLVLGDDLA TGLGQPVNKT RLALIVLATL LASVNIAAVG 600
  601 TIAFLGLVAP HLARIVVGMN HQRLFVCSAL FGAILLSIAD LLGRTIAYPK EIPSGLVVAV 660
  661 LGAPYFLWLM RKSGKKVN