YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264161, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	43	0.90
Non-Cytoplasmic	44	49	0.74
Transmembrane Helix	50	71	0.90
Cytoplasmic	72	76	0.73
Transmembrane Helix	77	98	0.83
Non-Cytoplasmic	99	103	0.83
Transmembrane Helix	104	126	0.91
Cytoplasmic	127	136	0.83
Transmembrane Helix	137	156	0.92
Non-Cytoplasmic	157	169	0.82
Transmembrane Helix	170	190	0.91
Cytoplasmic	191	196	0.84
Transmembrane Helix	197	216	0.93
Non-Cytoplasmic	217	243	0.88
Transmembrane Helix	244	265	0.88
Cytoplasmic	266	277	0.85
Transmembrane Helix	278	300	0.84
Non-Cytoplasmic	301	312	0.70
Transmembrane Helix	313	334	0.88
Cytoplasmic	335	340	0.83
Transmembrane Helix	341	362	0.90
Non-Cytoplasmic	363	370	0.89
Transmembrane Helix	371	395	0.88
Cytoplasmic	396	408	0.83
Transmembrane Helix	409	428	0.94
Non-Cytoplasmic	429	429	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGILERTFK LGLHETSPKQ EVLAGVTSFF TIVYIMIVNA SILSDAGIPL EAGILATVFS  60
   61 SFVGCLLMAF WANAPAILVP GMGVNAFFTY TAVHTLGLTW QEALAAVFIS GIIFAIAAFT 120
  121 PIARVLSVSI PKSLKEAITV GIGLFLAFIG LQKGGLVVSN PNTAVAMGKL SNPVVLATVL 180
  181 TLIVALVLFI RNVRGNFLWT IAIGTGIAWL FGLVDTSQVG NSSFSFANYG DVFGAMSFGK 240
  241 LSSLPFWIAT FSLSMVLIFE NMGLLHGLLE DDRKFPRAYQ ANAISAMTCG LFGTSPTVST 300
  301 VESAAGITAG GKTGLTSIVT GLLFFASLFA LPFVKLIPDS AIAPILIIIG GLMITSIQQI 360
  361 PLNDFSEGFP AFLIIIMIPL TYSIADGIAF GFIAYPILKV ALGKRKEVAP SMYIITCLFL 420
  421 AMFVLHAIG