YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.96
Transmembrane Helix	15	39	0.85
Non-Cytoplasmic	40	50	0.83
Transmembrane Helix	51	70	0.94
Cytoplasmic	71	80	0.84
Transmembrane Helix	81	102	0.94
Non-Cytoplasmic	103	109	0.82
Transmembrane Helix	110	131	0.92
Cytoplasmic	132	139	0.90
Transmembrane Helix	140	161	0.93
Non-Cytoplasmic	162	167	0.83
Transmembrane Helix	168	189	0.91
Cytoplasmic	190	199	0.94
Transmembrane Helix	200	221	0.91
Non-Cytoplasmic	222	229	0.75
Transmembrane Helix	230	250	0.95
Cytoplasmic	251	268	0.95
Transmembrane Helix	269	293	0.89
Non-Cytoplasmic	294	300	0.76
Transmembrane Helix	301	323	0.85
Cytoplasmic	324	331	0.84
Transmembrane Helix	332	352	0.91
Non-Cytoplasmic	353	359	0.79
Transmembrane Helix	360	381	0.93
Cytoplasmic	382	401	0.88
Transmembrane Helix	402	423	0.92
Non-Cytoplasmic	424	476	0.94
Transmembrane Helix	477	496	0.92
Cytoplasmic	497	513	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQLLKKDS NKTKFVVAGL LLGILMAAMD NTIVATAMAT IVGDLGGFDK FVWVTSAYMV  60
   61 ATMAGMPIFG KLSDMYGRKR FYIGGLILFL FGSALCGTAS SIEQLSIYRA IQGIGGGALM 120
  121 PIAFTIMYDI FPPEKRGKMT GLFGAVFGTS SVFGPLLGAY ITDYISWHWV FYINIPLGLI 180
  181 SFFFITKYYS ESLEFRKQKI DWAGAITLVI SIVCLMFALE LGGKEYAWNS TVIIGLFTTV 240
  241 VIMLIIFFFV ERKATEPIIS FHLFKKPLFA ASQGVAFFYG AAFIICTVYI PIFVQGVLGG 300
  301 SASNAGLILT PMMVGSVIGS QTGGQLASRT SYRNIMMVSG VFFVLGIYLL STLTMDTPRL 360
  361 LVTLFMVLAG LGVGFSFSVL SMSSIHKLEM RDRGSATSTN SFFRSLGMTL GVTIFGTIQN 420
  421 HIFTDKLNTL FPPELAKLAP KGEDTSFLLS PGATDKIPAE ILTGIKEALA TSIASTFFWA 480
  481 LIPAVLSIIC ILLMGNERLF TGPKTKQKQK QVS