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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30258562, gi|...
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNMTKFHT NKGAGYFMIL FLLLFLLLLA RFFYIQATGS VHNQDLNELA KQKHSKTGVL  60
   61 EANRGTIYDQ NGHVLAQDAN SYKLVAELKG AKPVEDKEDT AKKIAGVLGK DEEKILATLN 120
  121 KEDRSQVEFG KLGKGLTKEQ KEQIEALKLP GISFITENAR VYPNGDFASY VVGHARPDDK 180
  181 GIAIGQFGLE KSLDKYLGAS HGEVAYTGDR RGVSLDGGKV NVKAPKNGDN VYLTLDQRIQ 240
  241 SYLEDAMKEA SKHYEPESLI GIVADPKTGK ILGMSSKPSY DPNQENNQYF YNDAIANAFE 300
  301 PGSTMKIFTL AAAINEGVYK GQDYYQSGTY PVGNRKIKDH NGGAGWGSIT FDEGVERSSN 360
  361 VAFAILGDQK LGPERFRKYI HSFGLDEKTK IDLPGEGSNT IVFDQQIQQV TTAFGQGSTV 420
  421 TPIQLVQAAT AIANDGKMMK PYTIDKIVDP ITEEVKLEHK PEEVGKPVTK ETAAQVRQLL 480
  481 ERVVTSPKGT GTAYKVDGYS VGGKTGTAQI PDGKGGYMTG RENYIFSFLG MAPMDDPQLV 540
  541 VYVAVKKPKL KDDESGAQPL ADIFKYVTKN SLEYLKIKPN EVKDPKKYVK EQQTAVPDVT 600
  601 EKTMEEAKKA IDKAKLRPIV LGEGKVQQQV PKATEQTLKG DRVFLVGDKP TMPNIQGWAL 660
  661 RDVMNLAKTL KLNLKPTGTG YVTEQSVPEG TLLQPGTELG VTLVPPLEPQ QEAEKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle