YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263536, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHSSSRER KYKRKYKKTT IISSLLAVLL FGGVGYGAYV YMKTSNLVQK SNVNLARGEK  60
   61 SNLREETVKP ITNNVSLLIM GIDENQERQK EYNGAFHTDA LLLATFNKDD KTVKLTSIPR 120
  121 DTYTYVPVEK KKDKITHAYG SGFVKKGKDG GPQASVEAVE KLLQVPVDYF VKFNFNSFTK 180
  181 IIDGLDGIEV DVPVEFTEQN SKDEPDAIHL KKGLQKLNGE EALALARTRH IDSDAMRGQR 240
  241 QQLVMEAILS KLKSVGSITK LEKIVEAVDG DFKTNLAMDD ILSFYKYGLN CSVEKIQLAG 300
  301 DDLYLPNGPN GQRVYYYNPN KKDLQSLSNT LRTHLGLSEK EIEEN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	42	0.79
Non-Cytoplasmic	43	345	0.99