YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263525, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.92
Transmembrane Helix	11	30	0.95
Non-Cytoplasmic	31	41	0.84
Transmembrane Helix	42	63	0.92
Cytoplasmic	64	87	0.91
Transmembrane Helix	88	111	0.87
Non-Cytoplasmic	112	118	0.62
Transmembrane Helix	119	137	0.90
Cytoplasmic	138	145	0.62
Transmembrane Helix	146	165	0.92
Non-Cytoplasmic	166	185	0.87
Transmembrane Helix	186	208	0.88
Cytoplasmic	209	217	0.91
Transmembrane Helix	218	240	0.93
Non-Cytoplasmic	241	268	0.90
Transmembrane Helix	269	289	0.92
Cytoplasmic	290	304	0.87
Transmembrane Helix	305	324	0.93
Non-Cytoplasmic	325	336	0.79
Transmembrane Helix	337	358	0.92
Cytoplasmic	359	365	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRAKREIS LFQYILTISG VQVGFGVLTL PREVAQGANT DGWMSIIIGC VITTLVSLCI  60
   61 VKIMEKHPGY TLLDVLTRYL GKWLGRIGMI FWILYAVLAA VSLVFSLLYV IHIWILPRSP 120
  121 MFLIMILLSI PMLMLACKGV LIISRFAVFT VIFTLWMPLL LFIPLKDGHW IYLLPFLKEG 180
  181 WIPVVTTVKS TIIAFLGFEF AFVLYPYLTN KPAAKKGIII ANMITLCVYL QVTFVSFVYF 240
  241 SPDGITKFLW PTLSLVTPFH FSFLERFEII FLSFYLFIIF DSCIPYIFTA SDGINQLLNK 300
  301 KGSPLPVWIL LFGCIFVLFF YIPSSYQISA LREFWGTASY FIVFLFPVVF LLYMTLYLHW 360
  361 KRRKI