YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258159, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPFNKWIRG EKSFSGQEQA DHILNKSISS SLSLNLKHLS KLFSGIPELI TRTFPLKNGK  60
   61 EAALIYMEGL VDKTVINVDI LRPLLFKEWN EDDFWESSIS IGNIKEVQKW TDIEQSLLHG 120
  121 KSILFINGQL SALELDTQAA PKRSIEEPTT ESSLKSSHEG FNEVASDSIA LIRRYIPNRE 180
  181 LKVKAFTVGE RAASKVFMLY LADVANEDVI QEMSCRIESI KVDAILTTGE LEGFVEDNSY 240
  241 TLFPQLSITE RPDTTAHHIL DGRIAVVVDR SPGVLIGPMT FSSFFQTIDD YSFRPMIPSF 300
  301 IRLLRFTGLF IAIFAPALYI AMISFHYEVI PLKLLLTIGE SRAKIPFPPI LEALLMELVL 360
  361 EMLREAAVRL PGPVGQTIGV VGGIVIGQAA VQAGIVSNVM VIVVSITAVA SFIIPNLEMS 420
  421 AGIRLLRFPM MIIASLFGVI GIMVGMAIII IHILSMESLG VPYGSPFSPL FASDLKDILV 480
  481 RLPWKIMKKR PLSLNLKQEN RQSDIEEMEE DK

Type	Start	End	Confidence
Cytoplasmic	1	302	0.61
Transmembrane Helix	303	325	0.89
Non-Cytoplasmic	326	379	0.42
Transmembrane Helix	380	414	0.76
Cytoplasmic	415	430	0.74
Transmembrane Helix	431	454	0.91
Non-Cytoplasmic	455	512	0.55