YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257074, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFQGQFAN KGGRNAPKID KAKNTKGTVM RVWNYMGYQK AALTFVIFLV LVTTLLGLLG  60
   61 PYLMGVIIDQ YIVPKDVSGT ARMCLLLIAI YGVTVLLTWL QTFVMVNVAL KTIQKIRQDI 120
  121 FKKIQTLSLR FFDVRSQGDL MSRVTNDIDN LNQALTQSVV QIISSALTFI GVTIAMFALD 180
  181 WILAIVTLIT VPIMFFVTKK LVAYSGKNFA KRQKDLGELN GFIEEAITGA DVTTLYGKEK 240
  241 ETVQKFNKIN EQLRVSATKA DTFSAFIFPS MNFINNLGMG LVIGTGSVMV LNGMTTVGVI 300
  301 AAFINYSRQF SRPLSQFATL MNTIQAAVAG GERVFEIMDE VPEIKNKKDA FVIQNLHGHV 360
  361 ALENVSFGYE ENKTILKEVS LKARPGETIA LVGPTGSGKT TIINLLTRFY DVQQGQIYID 420
  421 EKNIKEYDLN SLRSKIGVVL QDTYLFAGSI MDNIRYGRLD ASDEEVINAA KAASAHSFIK 480
  481 HLPNQYETKI ATEGSNLSQG QKQLLAIARA ILADTDILIL DEATSNIDTR TELQIQEGLN 540
  541 NLMRGRTSFV IAHRLKTIEK ADQILVIKDG SILEKGNHES LMEDRGFYFD LYTSQFKI

Type	Start	End	Confidence
Cytoplasmic	1	40	0.78
Transmembrane Helix	41	64	0.89
Non-Cytoplasmic	65	82	0.70
Transmembrane Helix	83	108	0.79
Cytoplasmic	109	157	0.75
Transmembrane Helix	158	178	0.74
Non-Cytoplasmic	179	180	0.58
Transmembrane Helix	181	203	0.80
Cytoplasmic	204	279	0.87
Transmembrane Helix	280	304	0.91
Non-Cytoplasmic	305	598	0.86