YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256857, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	43	0.86
Non-Cytoplasmic	44	56	0.66
Transmembrane Helix	57	81	0.85
Cytoplasmic	82	93	0.62
Transmembrane Helix	94	114	0.86
Non-Cytoplasmic	115	133	0.70
Transmembrane Helix	134	160	0.75
Cytoplasmic	161	179	0.79
Transmembrane Helix	180	204	0.89
Non-Cytoplasmic	205	223	0.90
Transmembrane Helix	224	246	0.93
Cytoplasmic	247	266	0.95
Transmembrane Helix	267	284	0.91
Non-Cytoplasmic	285	291	0.67
Transmembrane Helix	292	311	0.91
Cytoplasmic	312	319	0.86
Transmembrane Helix	320	339	0.92
Non-Cytoplasmic	340	360	0.78
Transmembrane Helix	361	381	0.90
Cytoplasmic	382	387	0.66
Transmembrane Helix	388	404	0.61
Non-Cytoplasmic	405	406	0.42
Transmembrane Helix	407	432	0.65
Cytoplasmic	433	448	0.56
Transmembrane Helix	449	469	0.91
Non-Cytoplasmic	470	476	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKNVVELH VDNNDTPKVK SSWVLPVALI LIVEIVLLLP SSLTMEAKWS LFGFCSAIIL  60
   61 WTTTTINSAY IALGSVLFLI ISGTAKQDLL FDSLASDVIW LMIGSFILGR ALQITGLAEK 120
  121 MTYFVVNRAR NISGLCWILT MIIQILAFFI PSTSGRAAVV LPVFQAICKE IGSRRIAKAL 180
  181 AILMPTVILV STSSTIIGAG SHLIALDMLN EFNNKNITFV EWLIWGLPFG IIMSFISCRV 240
  241 ILVLFLDKEE VKTKLQQKKV KFELSRNEKY TISILIAMVA FWLTEWLHGL EIATVTIIGV 300
  301 FLLTLPKLGV MQWKESLKGV SWNLILFVGA AIALGKSLME SGAAQWIMQN LFLVTELINK 360
  361 QSIFIVLLVI VILSVTSHLY ITSHTTRAVI FIPPLLYFAS SLQLNEVAVL FLGIVGMNYC 420
  421 LTFPVSSKAL LLFQESDRET FQPQDLLKLS SYLSVIYIFV MVIFYYAYWQ WVGLSL