YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261877, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	29	0.94
Non-Cytoplasmic	30	38	0.73
Transmembrane Helix	39	59	0.93
Cytoplasmic	60	89	0.85
Transmembrane Helix	90	112	0.89
Non-Cytoplasmic	113	139	0.89
Transmembrane Helix	140	158	0.94
Cytoplasmic	159	170	0.79
Transmembrane Helix	171	190	0.95
Non-Cytoplasmic	191	212	0.92
Transmembrane Helix	213	237	0.86
Cytoplasmic	238	250	0.84
Transmembrane Helix	251	275	0.88
Non-Cytoplasmic	276	295	0.95
Transmembrane Helix	296	321	0.83
Cytoplasmic	322	338	0.92
Transmembrane Helix	339	361	0.92
Non-Cytoplasmic	362	376	0.90
Transmembrane Helix	377	397	0.94
Cytoplasmic	398	417	0.95
Transmembrane Helix	418	439	0.95
Non-Cytoplasmic	440	445	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSQQWTSKL GFVLAAAGSA IGLGAIWKFP YMAGIGGGGA FFLIFIGFTL LIGLPLLLAE  60
   61 FVIGRSTQKE AVDAYREIAP KTLWPWLGKL GIVTCFILLS FYSVVGGWIL LYLWNAITGR 120
  121 LWEGNGAYEA TFGEIISNPY LAVGSQLLFI LITIFIVSKG VQNGVEKVNK YFMPALFVLF 180
  181 FVLIVRALTL DGAGEGVRFF LQPDFSNVTS EVILYAMGQS FFSLSVGVAV MVTYSSYLPK 240
  241 EESLPRSAFS IVGLTLVITL LAGLAIFPVV FAFGLEPSQG PGLLFIVLPA IFSKMAFGKV 300
  301 FFVIFLLLFF FATITSAISM LEISVASLTS KGKGKREKMA LIVGLLIFVV GVPSALSFGI 360
  361 LSDLKIFGKT VFDLADYAVS NVLMPLGVLL VSIFVPLKMK KDVLMKELGV SKNKGYKLFV 420
  421 LWLFLLRFIA PIAIIIVFLN VLGII