YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261866, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.78
Transmembrane Helix	56	75	0.90
Non-Cytoplasmic	76	79	0.69
Transmembrane Helix	80	101	0.88
Cytoplasmic	102	124	0.89
Transmembrane Helix	125	147	0.89
Non-Cytoplasmic	148	155	0.73
Transmembrane Helix	156	177	0.87
Cytoplasmic	178	185	0.84
Transmembrane Helix	186	207	0.93
Non-Cytoplasmic	208	224	0.93
Transmembrane Helix	225	246	0.91
Cytoplasmic	247	262	0.90
Transmembrane Helix	263	283	0.95
Non-Cytoplasmic	284	312	0.90
Transmembrane Helix	313	333	0.91
Cytoplasmic	334	357	0.85
Transmembrane Helix	358	377	0.88
Non-Cytoplasmic	378	384	0.71
Transmembrane Helix	385	405	0.90
Cytoplasmic	406	410	0.86
Transmembrane Helix	411	431	0.92
Non-Cytoplasmic	432	438	0.79
Transmembrane Helix	439	459	0.91
Cytoplasmic	460	480	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITFLVSIVV LIIGYFTYGK FIEKIFGVNY KRKTPAYVNQ DGVDYVPMDR RKNSMIQLLN  60
   61 IAGTGPIFGP ILGALYGPIA FVWIVIGAIF AGAVHDYLTG MISIRNKGAH IPELAGKFLG 120
  121 NAMRHIVNVF SLLLLVLVGT VFITTPASLL DIVLQGKVSI TIILSVIFVY YILSTILPID 180
  181 KIIGKIYPVL GALLLISAIG IGGMMIIKGS PIPELTFENM HPDNAPIFPL LMLTITCGAL 240
  241 SGFHATQSPI ISRTLQTEKH GRYVFFGMMV AEAIIAMIWA AAAMSIFSYG ELNELIKSGT 300
  301 PAAVVSEISK TMLGAVGGTI AVIGVIVLPI TSGDTAFRAA RSIIADYFNF EQTKLKNRLM 360
  361 IAIPLFVIAY GLTKIDFTIL WRYFSWANQS TAAIALWIGT MYLFIKGKPY VVSLIPAIFM 420
  421 TLMTVIYILN AKIGFNIPLN TSYIIGAVIT VILTAIFFMK AMKNKNENIE VDVQLEKEAV 480
  481