YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261846, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFGLATQI FVALVLGIVV GAIFYGNKTA ISYITPIGDI FIHLIKMIVV PIVISALIVA  60
   61 VAGVGDMKKL GKLGGKTILY FEIITTIAIL MGLLAANIFQ PGTGVDMNNL QQSDISSYKQ 120
  121 TADATEKQGF AETIVHIVPK NVFESIAQGD LLPIIFFSVL FGLGVAAIGE KGKPVFNFFE 180
  181 GVLEAMFWVT NQVMKFAPFG VFALIAVTVA KFGVATLLPL GKLVLAVYVT VILFVVIVLG 240
  241 INARMVGVNI FTLMKILKEE LILSFTTASS EAVLPNIMRK MEEFGCPKAV ASFVIPTGYT 300
  301 FNLTGSAIYQ ALAALFVTQM YGVHMSLTEQ ITLLFVLMLT SKGMAGVPGA SFVVVLATLG 360
  361 SMGLPLEGIA LIAGIDRILD MIRSSVNVLG NALAAIVMSK WEGEFDNEKA KQYVETVKET 420
  421 KAA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	41	0.84
Transmembrane Helix	42	65	0.90
Cytoplasmic	66	77	0.89
Transmembrane Helix	78	99	0.93
Non-Cytoplasmic	100	150	0.95
Transmembrane Helix	151	169	0.93
Cytoplasmic	170	195	0.81
Transmembrane Helix	196	215	0.90
Non-Cytoplasmic	216	223	0.72
Transmembrane Helix	224	246	0.90
Cytoplasmic	247	288	0.85
Transmembrane Helix	289	323	0.59
Non-Cytoplasmic	324	343	0.45
Transmembrane Helix	344	375	0.70
Cytoplasmic	376	423	0.62