YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255937, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.75
Transmembrane Helix	30	49	0.88
Non-Cytoplasmic	50	53	0.88
Transmembrane Helix	54	74	0.87
Cytoplasmic	75	85	0.83
Transmembrane Helix	86	106	0.93
Non-Cytoplasmic	107	114	0.76
Transmembrane Helix	115	134	0.95
Cytoplasmic	135	147	0.86
Transmembrane Helix	148	170	0.89
Non-Cytoplasmic	171	179	0.80
Transmembrane Helix	180	199	0.93
Cytoplasmic	200	208	0.80
Transmembrane Helix	209	228	0.92
Non-Cytoplasmic	229	233	0.71
Transmembrane Helix	234	253	0.93
Cytoplasmic	254	263	0.87
Transmembrane Helix	264	283	0.94
Non-Cytoplasmic	284	289	0.83
Transmembrane Helix	290	312	0.89
Cytoplasmic	313	327	0.74
Transmembrane Helix	328	348	0.85
Non-Cytoplasmic	349	353	0.73
Transmembrane Helix	354	376	0.90
Cytoplasmic	377	387	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFEFFFQIA LILLSTKLAG DLSVRLGQPS VLGKLIVGIV IGPAVLGWIE NSELLTQLSN  60
   61 VGVILLMFMA GLETDLEELN ANRNSSLAVA LGGIILPFVG GYVSGLVMGM EQGNAVFLGL 120
  121 LLCATSVSIS VQTLRDLGKM KTRESTTMLG AAVFDDILVV ILLAFAMSFL GTDDVNLTMV 180
  181 ILKKVVFFAS IILIGWKGVP AIMRWLSPLR VSESIVSAAL IICFSFAYFG ELLGIAGIIG 240
  241 AFAAGIAISQ TNYKHEVEKK VEPIAYAMFV PVFFVSIGMN ITFDGIGDQI GFILALTVIA 300
  301 VLTKLIGCGV GARMTGFDAK SSAIIGSGMV SRGEVALIIA GTGLSSGLLA QDYFTAIVIV 360
  361 VILTTMITPP MLKYTFGAKD KAMKASK