YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261705, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.93
Transmembrane Helix	5	24	0.94
Cytoplasmic	25	44	0.79
Transmembrane Helix	45	67	0.80
Non-Cytoplasmic	68	73	0.69
Transmembrane Helix	74	92	0.92
Cytoplasmic	93	118	0.86
Transmembrane Helix	119	139	0.89
Non-Cytoplasmic	140	150	0.62
Transmembrane Helix	151	169	0.92
Cytoplasmic	170	178	0.68
Transmembrane Helix	179	200	0.89
Non-Cytoplasmic	201	234	0.94
Transmembrane Helix	235	258	0.85
Cytoplasmic	259	268	0.95
Transmembrane Helix	269	293	0.89
Non-Cytoplasmic	294	324	0.90
Transmembrane Helix	325	349	0.91
Cytoplasmic	350	368	0.93
Transmembrane Helix	369	389	0.94
Non-Cytoplasmic	390	395	0.76
Transmembrane Helix	396	418	0.92
Cytoplasmic	419	425	0.80
Transmembrane Helix	426	445	0.94
Non-Cytoplasmic	446	462	0.86
Transmembrane Helix	463	486	0.87
Cytoplasmic	487	516	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTAFALFL IIVLGTLVIT YFASKKTKNA SEFYTAGGGL TGWQNGLAIA GDYMSAASFL  60
   61 GIAGAIALTG FDGFFYSIGF LVAYLVVLYL VAEPLRNLGK YTLADMIAAR FDAKKVRGVA 120
  121 ALNTMTISIF YMIAQLVGAG ALIKLLLGIE YTTSVLIVGT LMTVYVIFGG MTATSWVQIV 180
  181 KAVLLMAGTF IISVIVFAKF NFSVTEMFAQ MKTATPLKDS FLNPGVKYKD GLDTLSLNLG 240
  241 LVLGTAGLPH ILVRFFTVRD AKTARQSVVY ATWLIGAFYI MTIFLGFGAA AFVGNEAIMK 300
  301 ANPAGNMAAP LLAKALGGDF LFAFVSAIAF ATILAVVAGL VLTAASAFAH DFYNEIIRKG 360
  361 KSTEKEQVSM ARYASIGVAV LSIILALFAQ TLNVAFLVSL AFAVAASANL PVILFTIYWK 420
  421 RFNTTGAISG MIVGLVSAIV LVALSPNVWN PVAGKAIFVG EAIFPYTTPG IISIPLGFLA 480
  481 AYLGTVLSSK KEDAAKFDEI LVKSNTGHGI SDASSH