YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261425, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.92
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	50	0.97
Transmembrane Helix	51	72	0.94
Cytoplasmic	73	81	0.91
Transmembrane Helix	82	106	0.86
Non-Cytoplasmic	107	132	0.84
Transmembrane Helix	133	153	0.81
Cytoplasmic	154	174	0.87
Transmembrane Helix	175	199	0.79
Non-Cytoplasmic	200	229	0.90
Transmembrane Helix	230	249	0.92
Cytoplasmic	250	278	0.93
Transmembrane Helix	279	303	0.92
Non-Cytoplasmic	304	334	0.92
Transmembrane Helix	335	356	0.93
Cytoplasmic	357	368	0.95
Transmembrane Helix	369	392	0.92
Non-Cytoplasmic	393	410	0.92
Transmembrane Helix	411	433	0.89
Cytoplasmic	434	475	0.85
Transmembrane Helix	476	496	0.76
Non-Cytoplasmic	497	513	0.92
Transmembrane Helix	514	535	0.93
Cytoplasmic	536	552	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILAFLIMLV LPLLQLFTQA FYDKDGAFIG VANFSKYFTT PTLVQSLQNT VWVSGATTII  60
   61 AVTLAFAYAY AIARTNVFGK RVFQYIALLP LFAPTMMHGI ALTYLFGNQG LVTKGMFGLF 120
  121 EGIQIPLYGP VGIVMAEVMY TFPQAFLILL IAFQGSDYRL YEASNMLGAS KIKQFFTVTL 180
  181 PSVKYGLISA MFVVFTLSFT DFGAPKIVGG QYNVLATDVY KQVIGQQNMP MGATVGMILL 240
  241 IPAIFAFAVD RITQRKQANF LSSKAVPYRI TANKKRDVVS FIYCSVITLM IVLLFVAVGI 300
  301 AASVKVWPYN MSFTFEHFNF SSLTGDGLEA FKNSVIVSAV TAVIGAILTF MFAYAIEKID 360
  361 QLKFFRKTGY FFSIVPLAIP GLVLGLGYVF FFSQPTIQIF GLSVTNPFHS LYGTIAVLVL 420
  421 VNIIHFYSVT FVTATTALKK LDREFELVSQ SMGIPFYKTF FRVTVPMCLP AILEMVMYYF 480
  481 VNSMVTVSAV VFLYAADFKL AAVSIVNMDD AGNVAPAAAM SVLIVVTNIV VRVVYEWGTK 540
  541 ALRNRTSQWQ KR