YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254627, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	37	0.72
Transmembrane Helix	38	59	0.88
Cytoplasmic	60	69	0.65
Transmembrane Helix	70	98	0.76
Non-Cytoplasmic	99	108	0.73
Transmembrane Helix	109	129	0.92
Cytoplasmic	130	136	0.71
Transmembrane Helix	137	155	0.93
Non-Cytoplasmic	156	161	0.60
Transmembrane Helix	162	184	0.80
Cytoplasmic	185	214	0.69
Transmembrane Helix	215	237	0.77
Non-Cytoplasmic	238	263	0.72
Transmembrane Helix	264	287	0.81
Cytoplasmic	288	297	0.62
Transmembrane Helix	298	332	0.79
Non-Cytoplasmic	333	360	0.50
Transmembrane Helix	361	385	0.81
Cytoplasmic	386	492	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQKIAKECL AGFTVAIVAL PLAIAFGIAA TGTSEGALVG LYGAIFAGLF AALFGGTPGQ  60
   61 VTGPTGPITV IATGVIATHG LEASFIAFMM AGLFQILFGV CKLGSYVRYI PYPVVSGFMN 120
  121 GIALIIILGE MKHVQNSFLL VVLTIIVMIV SGKWIKAIPS SLVALVGVTA LLPLFSSALE 180
  181 GLTVKLPVIG NLTLNKVIEK IGTIPEAMPT LHIPSLGGTG IAELVLPALS IALLGSIDSL 240
  241 LTSVVMDNVT GTRHKSNKEL VGQGIGNMVS GLFGGLAGAG ATVRSIVNIR SGGKTALSAC 300
  301 MHSVILFIFI MGLGSVVQYI PLAVLSGILI LTGIGMFDWE SMKKMHVAPK GDVIVMLVTM 360
  361 IVTVKFDLMI AVAFGILLSF LIYMVKCKER KVSIVKEKEA TYKIKGPLSF LTVDRVFYAL 420
  421 QDVKSPVVLR MKDARYMDVS GAMALLNFIE QSDKSGLSVT LEQVPVHIKK TLVTMASNEQ 480
  481 KDKLLFAEVD VM