YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254358, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHLSSKKKK QTFCSIPDFI HAMKKSSDFS SYNIIEDGTL CLFYYKSTVE SLIIKRFILA  60
   61 PIKNKLDEIQ HIDDILNVVS IEDTLINPSI DDIREKLLGG YVLLQLKKGS GQAAYALLRA 120
  121 ESTVLGTRLV NDTENEYSVI GPKVGFVENV DINIHLLRRN IVTEQLIFKE VSIGSMSKTK 180
  181 IVVAYIEGIT NEQHINTAMQ RLQDIDFDYP FDATLVEQLI SDNSNSPFRV LLPTERLDRS 240
  241 VYALLNGGVV ILTDGSPYAL AGPATLLDFF VSPEDYYLPW IAGSFLRLVR FFGAAFSLFS 300
  301 SAIYTAVLTY HYQMIPADLL GPIIYSRANV PFPPVLEALF LEITIELLRE AGARLPTKVG 360
  361 QTIGIVGGIV IGQASVEAAL TSTILLIAVA LSALASFTTP TVKMSSTIRI LRFPLIILAG 420
  421 AFGGVGLIVG FVFILAHLIH LKSLGSPYLL PLYPFRGLGT AEGLLRLPFS QTAERASFLR 480
  481 PKKKWRYDPN KAKEKRDGEE K

Type	Start	End	Confidence
Cytoplasmic	1	287	0.82
Transmembrane Helix	288	312	0.83
Non-Cytoplasmic	313	378	0.43
Transmembrane Helix	379	402	0.83
Cytoplasmic	403	414	0.81
Transmembrane Helix	415	439	0.91
Non-Cytoplasmic	440	501	0.61