YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIRDELGS PNDLTIREVA LAGSFTRCAV VFLCGLTDKD NVYKYVVRTL QYEEIQKDEA  60
   61 VVQTLLDRFI SIAEVGKKTT FPDIINAILA GDTVILIDNI QTAIVINSRA WEKRSLESPV 120
  121 TEDLIRGPRI GLNEDINVNK MLIRRSLRDP KLRFQSYIMG KRSQKEVTLV YIEDIINPYI 180
  181 VKELDRRLQS IVTDVVFETG TIEQLIQDNN LSPFPQFLNT ERPDNIVASL AKGKAAILVD 240
  241 GSPFALIAPL VFVDIFQSVE DHYERWVIGT LLRILRMGSG IVAILMPAMY VALVSYHQGL 300
  301 IPSKLAYSIA GAREGVPFPA YIETLMMALT MELIREAGIR LPKPMGQTIG IVGGLVIGEA 360
  361 AVNAGIVNPF LVIIIAVTAI ATFSLPVYSI TITFRILLFV FVLAATAFGL YGIILALIAL 420
  421 AVHITNLTSV GVPYTTPIAP AFYKDWKEEF IRMPKSMLKE RPEYLQTKDS TVRPKERE

Type	Start	End	Confidence
Cytoplasmic	1	273	0.82
Transmembrane Helix	274	294	0.91
Non-Cytoplasmic	295	314	0.63
Transmembrane Helix	315	334	0.62
Cytoplasmic	335	344	0.73
Transmembrane Helix	345	362	0.84
Non-Cytoplasmic	363	369	0.58
Transmembrane Helix	370	390	0.90
Cytoplasmic	391	396	0.71
Transmembrane Helix	397	422	0.87
Non-Cytoplasmic	423	478	0.70