YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260844, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.72
Transmembrane Helix	15	36	0.81
Cytoplasmic	37	46	0.76
Transmembrane Helix	47	71	0.87
Non-Cytoplasmic	72	91	0.79
Transmembrane Helix	92	114	0.92
Cytoplasmic	115	129	0.84
Transmembrane Helix	130	150	0.93
Non-Cytoplasmic	151	163	0.75
Transmembrane Helix	164	183	0.92
Cytoplasmic	184	189	0.68
Transmembrane Helix	190	210	0.89
Non-Cytoplasmic	211	240	0.91
Transmembrane Helix	241	264	0.89
Cytoplasmic	265	280	0.90
Transmembrane Helix	281	302	0.87
Non-Cytoplasmic	303	310	0.74
Transmembrane Helix	311	333	0.85
Cytoplasmic	334	339	0.63
Transmembrane Helix	340	362	0.85
Non-Cytoplasmic	363	375	0.87
Transmembrane Helix	376	400	0.90
Cytoplasmic	401	410	0.78
Transmembrane Helix	411	429	0.69
Non-Cytoplasmic	430	430	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQLQKYNTS VKQEFLAGIT TFFTFAYILV INPKILSDAG VPFDQAFTAT IIATVVGTIG  60
   61 MAIFANYPIV IAPAMGMNAY FAYSVVQKAE GITYVIAFSA VFVTGIIFLL LSFTSFRQKL 120
  121 ILAIPDSLKH AIAGGIGLFI AFIGLRLFGI IVDHPSNLVT IGDFHSPAVI LTLIGLILAA 180
  181 VLMALRVSGA LFISMIVTGV IAFFTGQLKF TDKIVAMPHL PEGIIVSNPI NAFSDVIEYG 240
  241 LYGVVFSFLL VLLFDTTGAL LGLIKQAGLI TDNTEKRFGK AFIADAIGGT TGSIFGTSPT 300
  301 AATIESSAGI AAGGKTGLTG IVVVGLTIIT AFFSPVIASL SSVAAITAPS LIIVGSLMAQ 360
  361 SIRDINWNEF EDALPAFLIF VGIPLTSSIA NGIAIGFLVY PVLKIVKGKG MEVHPLLYLF 420
  421 TILFGCHLFL