YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254289, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.98
Transmembrane Helix	9	32	0.89
Non-Cytoplasmic	33	39	0.89
Transmembrane Helix	40	63	0.90
Cytoplasmic	64	74	0.83
Transmembrane Helix	75	97	0.86
Non-Cytoplasmic	98	115	0.86
Transmembrane Helix	116	137	0.92
Cytoplasmic	138	143	0.95
Transmembrane Helix	144	163	0.90
Non-Cytoplasmic	164	192	0.84
Transmembrane Helix	193	212	0.94
Cytoplasmic	213	225	0.83
Transmembrane Helix	226	248	0.89
Non-Cytoplasmic	249	277	0.87
Transmembrane Helix	278	300	0.90
Cytoplasmic	301	311	0.84
Transmembrane Helix	312	332	0.92
Non-Cytoplasmic	333	339	0.70
Transmembrane Helix	340	359	0.94
Cytoplasmic	360	365	0.89
Transmembrane Helix	366	386	0.94
Non-Cytoplasmic	387	407	0.94
Transmembrane Helix	408	429	0.93
Cytoplasmic	430	433	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLQKKEIL LISLMLFSMF FGAGNLIFPP FLGYEAGEHV WISLVGFIIS ATGLPILGVI  60
   61 AIAKAGSFQA LAGRVHSSFA IIFPCIVYLF IGPGLGIPRA GSLAFEMGPG QFFPEAGSIV 120
  121 LLCYTVIFFS IVYWLSLSPS KLMGLFGKVL TPLLLGMIAL IFIKSMFTSV GSVKEAAGNY 180
  181 GQAPMFQGFL DGYLTMDALA ALIFGIVIAN ALRAKGIEDD KGLAKYMSIA GIGAGLLLSI 240
  241 IYVILGYVGS MSGSLGTFDN GAQVLAQVMT TLFGQGGVVL LGLIFTIACL CVSIGLVTSC 300
  301 SQFFASAFPK VAYKFWAFIL SFVSMILANL GLTQILKVSV PILGFIYPVA LTLIILGLFQ 360
  361 KYIGKYAYVY AVTVGIVAVF SAIDIFNKNV MLNQWTSVLK YIPFYTEGVG WIVPAIIGAC 420
  421 IGVIVSFVFN KKK