YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	46	0.93
Non-Cytoplasmic	47	66	0.87
Transmembrane Helix	67	86	0.92
Cytoplasmic	87	95	0.85
Transmembrane Helix	96	118	0.87
Non-Cytoplasmic	119	121	0.56
Transmembrane Helix	122	144	0.77
Cytoplasmic	145	163	0.75
Transmembrane Helix	164	185	0.93
Non-Cytoplasmic	186	191	0.85
Transmembrane Helix	192	210	0.97
Cytoplasmic	211	257	0.95
Transmembrane Helix	258	277	0.89
Non-Cytoplasmic	278	297	0.92
Transmembrane Helix	298	317	0.89
Cytoplasmic	318	325	0.88
Transmembrane Helix	326	345	0.94
Non-Cytoplasmic	346	355	0.79
Transmembrane Helix	356	377	0.93
Cytoplasmic	378	387	0.84
Transmembrane Helix	388	411	0.87
Non-Cytoplasmic	412	418	0.78
Transmembrane Helix	419	439	0.93
Cytoplasmic	440	449	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFTQFFKPA PHAERLPADR VDSEYRKLRL QVFLGIFIGY AGYYFVRKNF SLAMPYLIEQ  60
   61 GFSKGELGVI LSAVSIAYGL SKFLMGIVSD RCNPRYFLAA GLFLSGIINI IFGSFSFITT 120
  121 SIILMFVLQF LNGWVQGMGW PPCGRTMVHW FSISERGTKM SIWNVAHNVG GALMPSLVTL 180
  181 GLYFFANDWK SIFYFPGILS ILVGVYVLIT MKDTPQSCGL PSIEEHTGEY PPDEKIKDRE 240
  241 RELSAKEILF KYVLNNKFLW YIAIANVFVY FVRYGVVDWA PTYLVEEKSF THSSSRTAYA 300
  301 LYEWAGIPGT LLCGWMSDKL FKGRRAPAGI LFMVGVFIAV LVYWLNPPGN PMVDSIALVA 360
  361 IGFLIYGPVM LIGLHALDLA PKKAAGTAAG LTGFFGYLGG AAFASAAMGF IVDAFGWDGG 420
  421 FILLLASCVL AMFFLALTLK TGSVKQKQA