YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260789, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQKEQQES TGQKHMFPSL PENINYIENK LCHSDDIKKL DLPFQNGKGT ILYIESLADP  60
   61 NLIHQLALEP LLTRSDLSLD KAFATLNMKK ETNLNYGVQL LLQGKSLYFH EHVDSFCIFE 120
  121 TAISLKRDIA EPDNEGIVRG PHTGFVEDLA TNLTSIRKLI KSPNIVVKYF TLGEEMHTKV 180
  181 AIAYMQNIAN DDLVTEVKRR LETIKTDALM PPGYIQEFIE DTSFSPFPQQ LNTERPDRVA 240
  241 ANLMEGRVAI FSDGDPTALI VPVTLFAFYQ SPDDYNNRWI VGSFVRMIRL VSFLIAFLLP 300
  301 AIYIATVAFH PDVLPLELVY TIKASLEKVP LPPIFEALLM ELIFELLREA GIRLPSRVGQ 360
  361 TIGIVGGLVI GDAIVKAGLV SYTMIIVVAL TAISSFLVPS NDMSSAVRIL RFPLMLLAAL 420
  421 FGYVGISFGL IITFVHLCQL HSFHTPYLSP VAPMRIKDMK DSFVRLPIWS FWERPHDPKP 480
  481 KKMQRQHVTR EEEDGDKHAK

Type	Start	End	Confidence
Cytoplasmic	1	287	0.91
Transmembrane Helix	288	309	0.91
Non-Cytoplasmic	310	377	0.67
Transmembrane Helix	378	398	0.90
Cytoplasmic	399	413	0.74
Transmembrane Helix	414	437	0.89
Non-Cytoplasmic	438	500	0.88