YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254234, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.97
Transmembrane Helix	114	135	0.87
Non-Cytoplasmic	136	156	0.92
Transmembrane Helix	157	178	0.90
Cytoplasmic	179	183	0.85
Transmembrane Helix	184	204	0.89
Non-Cytoplasmic	205	235	0.93
Transmembrane Helix	236	257	0.84
Cytoplasmic	258	267	0.79
Transmembrane Helix	268	288	0.95
Non-Cytoplasmic	289	308	0.78
Transmembrane Helix	309	333	0.81
Cytoplasmic	334	346	0.78
Transmembrane Helix	347	370	0.88
Non-Cytoplasmic	371	378	0.83
Transmembrane Helix	379	399	0.83
Cytoplasmic	400	406	0.79
Transmembrane Helix	407	433	0.83
Non-Cytoplasmic	434	446	0.77
Transmembrane Helix	447	469	0.92
Cytoplasmic	470	475	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDYRKTAE EVLQYIGGKD NIEQAAHCVT RLRIALKDES KIDNDKLQSV SLVKGAFHNA  60
   61 GVFQIVIGPG DVDRVYAELI TLAGMKEATV ADVKDSGNQK LNPAQKFVKV FSDVFMPILP 120
  121 AIVTAGLLMG INNLLGAKDL FFDGKNLLDV YPNLSGLWDL INMMANTAFV FLPALVGWSA 180
  181 TKRFGGSPIL GIVMGLMLVH PALLNAWDYG KAATGLDGQK IEYFNILGLF QIEKVGYQGQ 240
  241 ILPVLVAAFV LSKVEIFLKK HVPNAIQLLV VPITTIVVTG VLALGIIGPV TRHIGDLLTA 300
  301 GLVGVYETVP VVGAVLFGAL YAPLVITGMH HMFIAIDLQL IAQHGGTFIW PMIALSNIAQ 360
  361 GSAALAMFWI SKNQNDKSMA STSAISAYFG ITEPAMFGVN LRNKFPFYAA IIGSAVAAIF 420
  421 ITLNGVLAPA IGIGGLPAFI SIIPKSIPMF IVGMVIAVVI PFTLTWLFAK RVKQK