YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260768, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.98
Transmembrane Helix	37	59	0.88
Non-Cytoplasmic	60	63	0.86
Transmembrane Helix	64	85	0.90
Cytoplasmic	86	93	0.81
Transmembrane Helix	94	111	0.96
Non-Cytoplasmic	112	117	0.74
Transmembrane Helix	118	137	0.91
Cytoplasmic	138	155	0.89
Transmembrane Helix	156	178	0.92
Non-Cytoplasmic	179	195	0.88
Transmembrane Helix	196	216	0.92
Cytoplasmic	217	249	0.96
Transmembrane Helix	250	268	0.95
Non-Cytoplasmic	269	296	0.93
Transmembrane Helix	297	317	0.92
Cytoplasmic	318	332	0.84
Transmembrane Helix	333	352	0.94
Non-Cytoplasmic	353	360	0.81
Transmembrane Helix	361	384	0.77
Cytoplasmic	385	394	0.51
Transmembrane Helix	395	411	0.89
Non-Cytoplasmic	412	421	0.67
Transmembrane Helix	422	443	0.92
Cytoplasmic	444	452	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAALKLDKA GEQQSPKKHP PGLYLLFLTE MWERFSYYGM RGLLVLYLTT AAVSGGLGFD  60
   61 KAFAVQLYGT FTAAVYFMPI IGGWLTDHYI TRRHAITLGG IIMAIGNFVL FSMNTKTGLF 120
  121 LGLVLLVIGN GFFKPNISTL LGELYEENDS RRDSAFTIFY MGINVGAFFA PLICGFLAED 180
  181 FFKTSVDGVM VMGYKYGFLA ACIGMIIGQI VFNLLAPRYL GTAGTTVIGK KTKNQPAVEK 240
  241 KPLTKQEKNR TWAIVILTCF VVFFWAGFEQ AGSSLTLYTD KFVDRTIFGW EIPTSWFQSV 300
  301 NPAFIVLLAP FVSMLWLKLS KSKRGDLKIP TKMAFGMILL GIGYLVLTLA VLKTGSSEAD 360
  361 ITVKANLLFI VITYMFHTIG ELFLSPIGLS MVSAIAPVKL ASLLMGVWLA GKLASFTQSL 420
  421 GYLEVFASIG IIVIVLGLVL LLFSKKVASM ME