YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254210, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.76
Transmembrane Helix	4	22	0.89
Cytoplasmic	23	31	0.69
Transmembrane Helix	32	56	0.81
Non-Cytoplasmic	57	87	0.68
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	164	0.77
Transmembrane Helix	165	186	0.91
Non-Cytoplasmic	187	192	0.72
Transmembrane Helix	193	214	0.87
Cytoplasmic	215	243	0.80
Transmembrane Helix	244	272	0.78
Non-Cytoplasmic	273	281	0.57
Transmembrane Helix	282	310	0.72
Cytoplasmic	311	330	0.76
Transmembrane Helix	331	354	0.87
Non-Cytoplasmic	355	370	0.73
Transmembrane Helix	371	391	0.91
Cytoplasmic	392	392	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFITFFLGL IVVFFLAYIA SNNKKHIKFK PIFIMLLIQL ILTYLLLNTE IGLILIRVIS  60
   61 SLFTKLLEYA ADGINFVFGG LANKGEMPFF LTVLLPIVFI SVLIGILQHF KILPFFIHWI 120
  121 GYFLSKINGL GKLESYNAIA SAIVGQSEVF ITVKKQLAQI PKHRLYTLCA SAMSTVSMSI 180
  181 VGAYMTMIEP KYVVTALVLN LFSGFIIVLI INPYDVKDDE DILEIKGEKQ SFFEMLGEYI 240
  241 LDGFRVAIVV GAMLIGFVAL ISCINDLFLI IFGITFQQLI GYVFAPIAFL IGVPSSEIVA 300
  301 AGSIMATKLV TNEFVAMMDL SKISNSLSPR TVGIISVFLV SFANFSSIGI ISGAVKGLNE 360
  361 EQGNVVARFG LKLLYGATLV SILSAIIVSI ML