YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254086, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.82
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	55	0.80
Transmembrane Helix	56	79	0.84
Cytoplasmic	80	132	0.82
Transmembrane Helix	133	155	0.86
Non-Cytoplasmic	156	172	0.93
Transmembrane Helix	173	196	0.90
Cytoplasmic	197	234	0.98
Transmembrane Helix	235	268	0.83
Non-Cytoplasmic	269	284	0.63
Transmembrane Helix	285	308	0.87
Cytoplasmic	309	321	0.55
Transmembrane Helix	322	345	0.67
Non-Cytoplasmic	346	349	0.64
Transmembrane Helix	350	370	0.69
Cytoplasmic	371	381	0.61
Transmembrane Helix	382	402	0.82
Non-Cytoplasmic	403	409	0.59
Transmembrane Helix	410	432	0.93
Cytoplasmic	433	434	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALLGFAMV FVFMFLIMKK RMSALVALIL IPITFALIGG FYADMGPMML EGIQKLAPTG  60
   61 IMLMFAILYF GIMIDSGLFD PVISRILKFV KGDPLKIVVG TAILTIIVSL DGDGTTTYMI 120
  121 TVSAMYPLYK RLGMNPLILA GVVMLGAGVT NLTPWGGPTA RVMSALGLDA SELFTPLIPG 180
  181 MIAGALWVVF VAYYLGKKER KRLGIMDVQY LKQMQTTDEQ AATVEAAVHK RPKLLWINFL 240
  241 LTATLLVCLI LEVMPLPVLF TIAFAIAVML NYPNLEQQKE RIASHAGNVL AVVSLVFAAG 300
  301 IFTGILSGTK MVDAMAKSVV TLIPDALGPQ LPIITALLSM PFTFFMSNDA FYFGVLPILT 360
  361 KAAATYGISA AEMGRASLLR QPVHLLSPLV ASTYLLVGMA KVDFGEHQRF TLLWAVGTTM 420
  421 VMLITGILIG VIPI