YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260712, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.95
Transmembrane Helix	8	30	0.92
Non-Cytoplasmic	31	49	0.96
Transmembrane Helix	50	71	0.93
Cytoplasmic	72	90	0.91
Transmembrane Helix	91	111	0.95
Non-Cytoplasmic	112	142	0.94
Transmembrane Helix	143	162	0.95
Cytoplasmic	163	189	0.95
Transmembrane Helix	190	210	0.92
Non-Cytoplasmic	211	226	0.75
Transmembrane Helix	227	246	0.92
Cytoplasmic	247	259	0.84
Transmembrane Helix	260	282	0.88
Non-Cytoplasmic	283	319	0.92
Transmembrane Helix	320	339	0.93
Cytoplasmic	340	347	0.90
Transmembrane Helix	348	372	0.88
Non-Cytoplasmic	373	403	0.93
Transmembrane Helix	404	424	0.90
Cytoplasmic	425	445	0.81
Transmembrane Helix	446	465	0.93
Non-Cytoplasmic	466	471	0.74
Transmembrane Helix	472	493	0.92
Cytoplasmic	494	516	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKENSVFY ISILLTTLFI IWGITPASWI QGYDLQSVTS SLNSFILNKF GWFYSLLMTA  60
   61 MIILATYLAF SKYGSIRLGK DGEKPKYSYP SWLSMLFGAG MGIGLLFYGI AEPISHFTDP 120
  121 LTGKAGTEES AKLAMQYSFF HWGLFPWALY AMVALTIAYF TFRKQKGSTI GATVTPLFNR 180
  181 SKNSPIGKTV DILAVLATVF GIVPSVGIGA QQIAGGLSYL FPSIHNTLLT QLVLIAIFAV 240
  241 LYLTSAQTGL DRGIKYLSNL NFSLTGILLV SFLLLGPTVF IMKYFTSTLG SYIGALPSMG 300
  301 LNLGAFNEKS SSWIENWTIF YWGWWISWSP FVGTFIARIS KGRTIKEFIF GVVLVPTLIC 360
  361 TFWFAVFGGT AIHMEMFQSL GVADEIAKNG TEIGLFAVIS HLPFSTFLTI IGLILVATFF 420
  421 VTSADSATFV VSMQTSNGSL SPKNSLKLIW GLTIAIIAAI LLQAGGLNAL QIAAIIAALP 480
  481 FSIVVVLMVT SLFKELRKED INSQTKEVPK KIKKVM