YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85108010
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.95
Transmembrane Helix	45	66	0.85
Non-Cytoplasmic	67	80	0.74
Transmembrane Helix	81	104	0.83
Cytoplasmic	105	119	0.68
Transmembrane Helix	120	144	0.71
Non-Cytoplasmic	145	174	0.77
Transmembrane Helix	175	197	0.87
Cytoplasmic	198	204	0.76
Transmembrane Helix	205	225	0.90
Non-Cytoplasmic	226	245	0.78
Transmembrane Helix	246	265	0.79
Cytoplasmic	266	283	0.82
Transmembrane Helix	284	309	0.85
Non-Cytoplasmic	310	332	0.88
Transmembrane Helix	333	354	0.85
Cytoplasmic	355	373	0.71
Transmembrane Helix	374	392	0.91
Non-Cytoplasmic	393	400	0.80
Transmembrane Helix	401	423	0.90
Cytoplasmic	424	451	0.82
Transmembrane Helix	452	471	0.92
Non-Cytoplasmic	472	484	0.70
Transmembrane Helix	485	505	0.91
Cytoplasmic	506	560	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKLSAVRR WSKRLAVEAE PGLTTAQLML TNHDLKPVEA ERRTWGAWNF VGFWIADSFN  60
   61 INTWMISSSM MFNGLSWWQS WLCVWIGYAI SGCFICLTGR IGATYHIGFP VASRSSFGIW 120
  121 GSFWPVLNRA AMACIWYGVQ AYIGGHCVYL MIRSIWKAWD RDTIPNTFSP TSGTTTADFV 180
  181 SFFIFWLCSL PAIWFPVHKI RHLFTVKAYF VPSAAIAFMI WAIVRAGDIG PIIRQPSSLK 240
  241 GSDLAWEFVK GIMTSIANFA TLIVNDPDFS RYARKPKDAL WPQLLTIPTG FAITSLIGIL 300
  301 VSSCSFSIYG EAVWDPLELL EKFLDEGNSA ERFGVFVIAF AFSLAQLGTN IAANSVSAGA 360
  361 DLTALLPRWI NIRRGGYICA AVGLAMNPWT LLKSNNQFTT YLSAYSVFLS SIAGVIIFDY 420
  421 YVVRRGYLEI KELYDGRKTG PYYYTWGIHW RAYAAYIAGI LINVVGFAGA VGRKVPIGAT 480
  481 YIYNVNFFAG FLVSGGVYSL LCHFFPVPAV SDKWMEVGDE IEDLRVTYDS DGATGSGHEI 540
  541 YADPMVGKSY KLGADDSKIV