YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM54_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLPNLPNK LPSRNWMIFW TVSASITAAI IYDRREKRRN IAKWRHAVEH LAAEPITDKL  60
   61 GLEQPRKLTI YLSAPPGDGL RVAQDHYTEY VKPVLAASGL DWEFVQGRRE GDVRAVVAER 120
  121 LRKVRRGWEN KEEQDPNREP TKDELIEIYR QQRGIKDYEG VRGDVVIGRH TWKEYLRGLH 180
  181 EGWLGPLVAP AEPAPLPPTP APAAAEGSTS TEDKPAEEKK EEEAPKPKRP PQPKPYNTTS 240
  241 DYSSETLHPL TPQELTPAVP IREPHILGFL NTPTRMVRFF NRRSLADDIG REVAAVCLAT 300
  301 HREFQQQTNP DAPSTDSVQY EQAKELEWEE QDWPKKVWKE DEADADKEVT EKIHIKPVVM 360
  361 DPRLAHRMRR FALTPEDEDR VSKIKVPEEE VEGWIKGSLR KACHWGYDKA FNKKKLVPLE 420
  421 DKDVE

Type	Start	End	Confidence
Cytoplasmic	1	15	0.30
Transmembrane Helix	16	32	0.63
Non-Cytoplasmic	33	425	0.70