YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264559, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.53
Transmembrane Helix	20	43	0.91
Cytoplasmic	44	49	0.49
Transmembrane Helix	50	70	0.78
Non-Cytoplasmic	71	74	0.53
Transmembrane Helix	75	96	0.80
Cytoplasmic	97	105	0.57
Transmembrane Helix	106	128	0.86
Non-Cytoplasmic	129	131	0.40
Transmembrane Helix	132	159	0.77
Cytoplasmic	160	167	0.57
Transmembrane Helix	168	189	0.88
Non-Cytoplasmic	190	196	0.54
Transmembrane Helix	197	218	0.89
Cytoplasmic	219	238	0.64
Transmembrane Helix	239	265	0.82
Non-Cytoplasmic	266	288	0.74
Transmembrane Helix	289	312	0.71
Cytoplasmic	313	319	0.87
Transmembrane Helix	320	340	0.92
Non-Cytoplasmic	341	348	0.67
Transmembrane Helix	349	370	0.90
Cytoplasmic	371	379	0.90
Transmembrane Helix	380	401	0.93
Non-Cytoplasmic	402	407	0.84
Transmembrane Helix	408	430	0.87
Cytoplasmic	431	434	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGMKNLDNQ HNQNHIMGTL QWFIFLLANS IALPIVVGGL FHLTTEEIFY LMQRTFFVVG  60
   61 ISSFLQGWLG HRLPIADGPA GSWVGVFTVL AYATAGQDQL HSTLQILELG MIISGVILIG 120
  121 LGVTGFIGRI LFLFTPIVTG TFLLLLCLQL SGVFLKGMLG ITATASQIDG FTAIIAFSIF 180
  181 LFVIILSNFG KGFVKSYAVL IGLISGWILF LIAGKVTISS QVTHFVQLPQ IFAWGLPKWN 240
  241 TGMAVSSFVM VCILVSNTVA AIIAINQATI QKGTIEQKQL KDGTWVGGIS HIISSVFSTV 300
  301 GVVPLPATAG FIRLTKQKYI RSFLLACMLL VVMSLFPSII RYLASLPSAV ASAVLMASFV 360
  361 QLIGIGLNNI KQVELNERNV TILGVAVLFG SGVMFLPSGA LQSLPSVMQY IFGNGLFVGT 420
  421 VVSILLEQIW RIGK