YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263893, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.52
Transmembrane Helix	21	47	0.75
Cytoplasmic	48	48	0.22
Transmembrane Helix	49	83	0.63
Non-Cytoplasmic	84	89	0.59
Transmembrane Helix	90	110	0.90
Cytoplasmic	111	120	0.82
Transmembrane Helix	121	143	0.89
Non-Cytoplasmic	144	153	0.89
Transmembrane Helix	154	175	0.88
Cytoplasmic	176	179	0.68
Transmembrane Helix	180	201	0.84
Non-Cytoplasmic	202	228	0.83
Transmembrane Helix	229	251	0.74
Cytoplasmic	252	306	0.80
Transmembrane Helix	307	328	0.88
Non-Cytoplasmic	329	336	0.60
Transmembrane Helix	337	360	0.82
Cytoplasmic	361	370	0.90
Transmembrane Helix	371	390	0.93
Non-Cytoplasmic	391	397	0.68
Transmembrane Helix	398	414	0.92
Cytoplasmic	415	427	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKPVLDVN EVPKPGKWLF LSIQHLFAMF GSTVLVPFLT GLNPSVALIS SGLGTLAFLL  60
   61 ITKGQVPAYL GSSFAFIAPI ITAKTAGGPG AAMLGGLLAG LVYILISLGI KKSGSKWIMK 120
  121 LLPPIVVGPV VMVIGLALAH TAVNMAMNGA DGKYSFTHFS VALVTLAITI ICSIFGRGFF 180
  181 SIIPVLLGII GGYIFAYFQG LVDLKPVAEA KWFVVPDFTV PFVTYTPEFS WKIVLLMVPV 240
  241 ALVTISEHIG HQIVLGNVIK RDLIEKPGLH RSIFGDGVAT LIASLIGGPP NTTYGENIGV 300
  301 LAITRAYSVY LFIGSAVFAI MFGFIGKISA LIHSIPTPVM GGVSILLFGV IASSGLRMMV 360
  361 DDKTDLSDKR NLMIASVILV IGIGGAVLHV GESFQVEGMA LAAIVGVLLN LLLPETKQIK 420
  421 QSKQIAS