YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227813384, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	307	0.52
Transmembrane Helix	308	329	0.90
Cytoplasmic	330	337	0.46
Transmembrane Helix	338	362	0.85
Non-Cytoplasmic	363	378	0.46
Transmembrane Helix	379	404	0.85
Cytoplasmic	405	421	0.49
Transmembrane Helix	422	442	0.91
Non-Cytoplasmic	443	458	0.44
Transmembrane Helix	459	483	0.78
Cytoplasmic	484	499	0.38
Transmembrane Helix	500	524	0.83
Non-Cytoplasmic	525	535	0.39
Transmembrane Helix	536	555	0.46
Cytoplasmic	556	561	0.72
Transmembrane Helix	562	584	0.87
Non-Cytoplasmic	585	600	0.81
Transmembrane Helix	601	621	0.95
Cytoplasmic	622	626	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLKRD TVIMNLTASN KEAVIDELVE KLNGANRLNS KAEFKEAILK RESQSTTGIG  60
   61 EGIAIPHAKT KAVKQPAICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSRL 120
  121 STLLMDEGFR KQLLEAKDEE ELLRLFDEKE NEKENEKENE KEEEVEVAQP EGNEPYVLAV 180
  181 TACPTGIAHT YMAADSLKAK AAELGIAIKV ETNGSTGIKN GLTKEDIERA TAIIVAADKQ 240
  241 VEMNRFAGKH VIQVPVADGI RKTEKLLNRA VKQDAPIFKG IKEDGKTEST EKEKGLGIYK 300
  301 HLMNGVSNML PFVVGGGILI ALAFSFGGIK AEGPLAELFM SIGGGGTGAF LFLVPILAGF 360
  361 IASSIADRPG FMPGVVGGFL AAHANAGFLG GLIAGFLAGY VVLGLKRLFS GLPVQLEGIK 420
  421 PVLLYPVFGL LITGVVMQKV VIPPVVALNE MLTGWLNGLN GTNAILLGLI LGAMMAIDMG 480
  481 GPINKAAFTF GIAAIEAQNF GVHSAVMAGG MVPPLAIAFA TTFFKSKFTE AERKSGLTNY 540
  541 IMGASFITEG AIPFAAADPV RVIVSCVVGS SIAGALSMLF QITLPAPHGG LFVIALVNKP 600
  601 VLYIFSILIG AVVSALMMGI WKKKVK